View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8085_low_9 (Length: 569)

Name: NF8085_low_9
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8085_low_9
NF8085_low_9
[»] chr4 (4 HSPs)
chr4 (37-262)||(26228937-26229163)
chr4 (73-262)||(33548473-33548663)
chr4 (328-388)||(26229229-26229289)
chr4 (328-388)||(33548729-33548789)
[»] chr2 (2 HSPs)
chr2 (37-262)||(23961741-23961968)
chr2 (328-388)||(23961615-23961675)
[»] scaffold0014 (2 HSPs)
scaffold0014 (37-262)||(133594-133820)
scaffold0014 (328-388)||(133887-133947)
[»] chr6 (1 HSPs)
chr6 (167-222)||(19777228-19777283)
[»] chr7 (1 HSPs)
chr7 (114-222)||(17020528-17020636)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 37 - 262
Target Start/End: Original strand, 26228937 - 26229163
Alignment:
Q  37 aatgtatgactcaaatctaagaataggtttcaactataaatacat-ttcattgccaaatcatataactcttcactactcaatggaatcaacttcatcgtc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||| ||    
T  26228937 aatgtatgactcaaatctaagaataggtttcaactataaatacatcttcactgccaaatcatatatctcttcactactcaatggaatcaagttcatcatc 26229036  T
Q  136 aattagtcaagtaccagccaatgaaagatctgtaaattgcagcattgctcctttaatgacatccgagcctaatagaccattcttcatagttgtccgcact 235  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  26229037 aattagtcaagtaccagccaatgaaagatctgtaaattgtagcattgctcctttaatgacatccgagcctaatagaccattcttcatagctgtctgcact 26229136  T
Q  236 gatgtaatactactctttctcacttca 262  Q
    |||||||||||||||||||||| ||||    
T  26229137 gatgtaatactactctttctcaattca 26229163  T

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Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 33548473 - 33548663
Alignment:
Q  73 taaatacat-ttcattgccaaatcatataactcttcactactcaatggaatcaacttcatcgtcaattagtcaagtaccagccaatgaaagatctgtaaa 171  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  33548473 taaatacatcttcactgccaaatcatatatctcttcactactcaatggaatcaagttcatcatcaattagtcaagtaccagccaatgaaagatccgtaaa 33548572  T
Q  172 ttgcagcattgctcctttaatgacatccgagcctaatagaccattcttcatagttgtccgcactgatgtaatactactctttctcacttca 262  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  33548573 ttgtagcattgctcctttaatgacatccgagcctaatagaccattcttcatagctgtctgcactgatgtaatactactctttctcaattca 33548663  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 26229229 - 26229289
Alignment:
Q  328 cgaaatagatcccctttttgttgctgaacattatgacgaactaatagacatctggagcttg 388  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  26229229 cgaaatagatcccctttttgttgctgaacactacgacgaactaatagacatctggagcttg 26229289  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 33548729 - 33548789
Alignment:
Q  328 cgaaatagatcccctttttgttgctgaacattatgacgaactaatagacatctggagcttg 388  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  33548729 cgaaatagatcccctttttgttgctgaacactacgacgaactaatagacatctggagcttg 33548789  T

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Target: chr2 (Bit Score: 181; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 37 - 262
Target Start/End: Complemental strand, 23961968 - 23961741
Alignment:
Q  37 aatgtatgactcaaatctaagaataggtttcaactataaatacattt--cattgccaaatcatataactcttcactactcaatggaatcaacttcatcgt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||||     
T  23961968 aatgtatgactcaaatctaagaataggtttcaactataaatacatcttacactgccaaatcatataactcttcactactcaatggaatcaacttcatcgc 23961869  T
Q  135 caattagtcaagtaccagccaatgaaagatctgtaaattgcagcattgctcctttaatgacatccgagcctaatagaccattcttcatagttgtccgcac 234  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  23961868 caattagtcaagtaccaaccaatgaaagatccgtaaattgcagcattgctcctttaatgacatctgagcataatagaccattcttcatagctgtccgcac 23961769  T
Q  235 tgatgtaatactactctttctcacttca 262  Q
    ||||||||||||||||||| ||||||||    
T  23961768 tgatgtaatactactctttttcacttca 23961741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 23961675 - 23961615
Alignment:
Q  328 cgaaatagatcccctttttgttgctgaacattatgacgaactaatagacatctggagcttg 388  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23961675 cgaaaaagatcccctttttgttgctgaacattacgacgaactaatagacatctggagcttg 23961615  T

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Target: scaffold0014 (Bit Score: 175; Significance: 6e-94; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 37 - 262
Target Start/End: Original strand, 133594 - 133820
Alignment:
Q  37 aatgtatgactcaaatctaagaataggtttcaactataaatacat-ttcattgccaaatcatataactcttcactactcaatggaatcaacttcatcgtc 135  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||| ||    
T  133594 aatgtatgactcaaatctaagaataggtttcaagtataaatacatcttcactgccaaatcatataactcttcattactcaatggaatcaatttcatcatc 133693  T
Q  136 aattagtcaagtaccagccaatgaaagatctgtaaattgcagcattgctcctttaatgacatccgagcctaatagaccattcttcatagttgtccgcact 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  133694 aattagtcaagtaccagccaatgaaagatctgtaaattacagcattgctcatttaatgacattcgagcctaatagaccattcttcatagctgtctgcact 133793  T
Q  236 gatgtaatactactctttctcacttca 262  Q
    |||||||||||||||||||||| ||||    
T  133794 gatgtaatactactctttctcaattca 133820  T

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Target: scaffold0014; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 133887 - 133947
Alignment:
Q  328 cgaaatagatcccctttttgttgctgaacattatgacgaactaatagacatctggagcttg 388  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  133887 cgaaatagatcccctttttgttgttgaacattacgacgaactaatagacatctggagcttg 133947  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 19777228 - 19777283
Alignment:
Q  167 gtaaattgcagcattgctcctttaatgacatccgagcctaatagaccattcttcat 222  Q
    |||||||||||||| ||||| || |||||||| ||| ||||||||||||| |||||    
T  19777228 gtaaattgcagcatagctccattgatgacatctgagtctaatagaccatttttcat 19777283  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 17020528 - 17020636
Alignment:
Q  114 caatggaatcaacttcatcgtcaattagtcaagtaccagccaatgaaagatctgtaaattgcagcattgctcctttaatgacatccgagcctaatagacc 213  Q
    ||||||||||||  || || ||||||||| || |||||   ||| ||||||| || ||||||||||| ||||| |||||||| || ||  ||||| ||||    
T  17020528 caatggaatcaagctcttcatcaattagtgaactaccacaaaatcaaagatcagttaattgcagcatagctccattaatgacttctgaaactaatcgacc 17020627  T
Q  214 attcttcat 222  Q
     ||||||||    
T  17020628 tttcttcat 17020636  T

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