View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8086_low_1 (Length: 292)
Name: NF8086_low_1
Description: NF8086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8086_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 53126202 - 53126477
Alignment:
| Q |
1 |
agtggtttgattgggatgcatatgtagaaaagatttacattggctttacatcccttaaaataaaatcaaacagctagagaagagaattaatttagtaagc |
100 |
Q |
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| T |
53126202 |
agtggtttgattgggatgcatatgtagaaaagatttacattggctttacatcccttaaaataaaatcaaacagctagagaagagaattaatttagtaagc |
53126301 |
T |
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| Q |
101 |
taatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaaagctgaaaagtaacaa |
200 |
Q |
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| T |
53126302 |
taatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaaagctgaaaagtaacaa |
53126401 |
T |
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| Q |
201 |
gaaaacaatgagaagaatcaataagctgttcacttgctcttaataataaatatcacctgagtttcattaacttact |
276 |
Q |
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| T |
53126402 |
gaaaacaatgagaagaatcaataagctgttcacttgctcttaataataaatatcacctgagtttcattaacttact |
53126477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 85 - 276
Target Start/End: Original strand, 53108482 - 53108675
Alignment:
| Q |
85 |
aattaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaa |
184 |
Q |
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| T |
53108482 |
aattaattttgtacgctaatctttacatcataccttgagttgttcagcaaatctctgacgttgcactactggatcattcaattcagtatagccgttgcaa |
53108581 |
T |
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| Q |
185 |
agctgaaaagtaacaagaaaacaatgagaagaatcaataagctgttcacttgctctta--ataataaatatcacctgagtttcattaacttact |
276 |
Q |
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| T |
53108582 |
agctgaaaattaacagacaaacagtgacaagaatcaaaaagttgttaacttgcttttattttaataataatcacctgagtttcattaacttact |
53108675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 92 - 235
Target Start/End: Original strand, 53113601 - 53113744
Alignment:
| Q |
92 |
ttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaaagctgaa |
191 |
Q |
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| T |
53113601 |
ttagtaagctaatctttagatcataccttgagttgttcggcaaatctctgacgttgcactacaggatcattcaattcagtatatgcattggaaagctgaa |
53113700 |
T |
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| Q |
192 |
aagtaacaagaaaacaatgagaagaatcaataagctgttcactt |
235 |
Q |
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| T |
53113701 |
agttaacagaaaaacagtgacaagaatcaaaaagttgttaactt |
53113744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 53117831 - 53117965
Alignment:
| Q |
65 |
atcaaacagctagagaagagaattaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattca |
164 |
Q |
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|||||||| ||||| | ||| ||||||||||| |||||| |||| |||||||||||||||||| |||||||||| ||||||||| || |||| ||||| |
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| T |
53117831 |
atcaaacaattagagcacagacttaatttagtacgctaatctttacatcataccttgagttgttcggcaaatctctgacgttgcactactggatcattca |
53117930 |
T |
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| Q |
165 |
gttcagtatatgcattgcaaagctgaaaagtaaca |
199 |
Q |
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| T |
53117931 |
attcagtatatgcattgcaaagctgaaaattaaca |
53117965 |
T |
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