View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_high_11 (Length: 473)
Name: NF8087_high_11
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 23168091 - 23167645
Alignment:
| Q |
17 |
gtttcttcctagcaggactactcccaatgcgtcgacaaattccttcggggtgtatggttatcagcctaatcttgtagctaggcattttggtttggttcag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23168091 |
gtttcttcctagcaggactactcccaatgcgtcgacaaatttcttcggggtgtatggttatcagcctaatcttgtagctaggcattttggtttggttcag |
23167992 |
T |
|
| Q |
117 |
gttcgtccttgtccattctatcattctgaacaagatatgaggaaaccgaaaaccgaagctcaatggcgaaccatcctgtcaaagttcaacaaagatttcc |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23167991 |
gttcgtccttgtccattctatcattttgaacaagatatgaggaaaccgaaaaccgaagctcaatggcgaaccatcctgtcaaagttcaacaaatatttcc |
23167892 |
T |
|
| Q |
217 |
caatctttacacctttccactttgaactttcgtacgaatgtactcaatcattttttgtgtggtggcaaaagcatttttctgatggcagtggagaagtgaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23167891 |
caatctttacacctttccactttgaactttcgtacgaatgtactcagtcattttttgtgtggtggcaaaagcatttttctgatggcagtggagaagtgaa |
23167792 |
T |
|
| Q |
317 |
tctagacaacctgctctctgaattggtttctgcttttacatccttgcaagaaaaatgtagga-aaaacaaaggtacgttgttcctcttttgaatcttgaa |
415 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23167791 |
tctagacaacctgctctttgaattggtttctgcttttacttccttgcaagaaaaatgtaggaaaaaacaaaggtacgttgttcctcttttgaatcttgaa |
23167692 |
T |
|
| Q |
416 |
tatgaattttgttttttccttgtacatgtctttctaactcttttcat |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23167691 |
tatgaattttgttttttccttgtacatgtctttctaactcttttcat |
23167645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 25110281 - 25110696
Alignment:
| Q |
16 |
agtttcttcctagcaggactactcccaatgcgtcgacaaattccttcggggtgtatggttatcagcctaatcttgtagctaggcattttggtttggttca |
115 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||| | | || ||||||||||| |
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| T |
25110281 |
agtttctttttagcaggactactcccagtgcttcgactaattccttcggggtttatggttatcagcctaatcttgtagctttgaaattcggtttggttca |
25110380 |
T |
|
| Q |
116 |
ggttcgtccttgtccattctatcattctgaacaagatatgaggaaaccgaaaaccgaagctcaatggcgaaccatcctgtcaaagttcaacaaagatttc |
215 |
Q |
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|||| |||||||| |||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25110381 |
ggtttgtccttgtgcattctctcattctgaacaagatatgaggaaatcgagaactgaagctcaatggcgaaccatcttgtcaaagttcaacaaagatttc |
25110480 |
T |
|
| Q |
216 |
ccaatctttacacctttccactttgaactttcgtacgaatgtactcaatcattttttgtgtggtggcaaaagcatttttctgatggcagtggagaagtga |
315 |
Q |
| |
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|| | |||| ||||||||||||||||||||||||| |||||||||| || |||||||||||||| ||||| |||||| ||||| || | | || || |
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| T |
25110481 |
ccgaactttctacctttccactttgaactttcgtacaaatgtactcagtcgttttttgtgtggtgacaaaaatatttttttgatgagagcgaaagagcga |
25110580 |
T |
|
| Q |
316 |
atctagacaacctgctctctgaattggtttctgcttttacatccttgcaagaaaaatgtaggaaaaacaaaggtacgttgttcctcttttgaatcttgaa |
415 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |||||||||| || |||| || || |
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| T |
25110581 |
atctagataacctgctctctgaattggtttctgattttacttccttgcaagaaaaatgtcggaaaaacaaaggtgtgttgttcctccttcgaattttcaa |
25110680 |
T |
|
| Q |
416 |
tatgaattttgttttt |
431 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
25110681 |
tatgaactttgttttt |
25110696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 14658834 - 14658881
Alignment:
| Q |
25 |
ctagcaggactactcccaatgcgtcgacaaattccttcggggtgtatg |
72 |
Q |
| |
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|||||||||||||||||||||| | |||| |||||||||||||||||| |
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| T |
14658834 |
ctagcaggactactcccaatgctttgacagattccttcggggtgtatg |
14658881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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