View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_high_15 (Length: 431)
Name: NF8087_high_15
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 41206896 - 41207321
Alignment:
| Q |
13 |
tatagttctcggcatatcatgattttctgtcattttctattcgagacaca-------------atagttcatttatatccttcggcttttttaaaatnnn |
99 |
Q |
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| T |
41206896 |
tatagttctcggcatatcatgattttctgtcgttttctattcgagacacactttgcgcatagaatagttcatttatatccttcggcttttttaaaataaa |
41206995 |
T |
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| Q |
100 |
nnnntatgtgttagattatatcaactatcaagcatatttaatataagacattcattaaaatagaaatagataaacagctgcaagcctatttctaatttgt |
199 |
Q |
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| T |
41206996 |
aaaatatgtgttagattatatcaactatcaagcatatttaatataagacattcattaaaatagaaatagataaacagctgcaagcctatttataattttt |
41207095 |
T |
|
| Q |
200 |
gaaagataaaggtactcaaattaagtaactaggtttcttcctttttcctcttttcttccttca---nnnnnnnnnnattatgacatttata----tggtt |
292 |
Q |
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| T |
41207096 |
gaaagataaaggtactcaaattaagtaactaggtttcttcctttttcctcttttcttccttcattttttttttttttttatgacatttatatggttggtt |
41207195 |
T |
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| Q |
293 |
taaatgtaattgcaaaagaggaaacatctaaaatgtatatgaaacaaagaaagtggttctattcattcaatacataaaaaccaatatcacaaaggcacaa |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41207196 |
taaatgtaattgcaaaagaggaaacatctaaaatgtatatgaaacaaagaaagtggttctattcattcaatacataaaaaccaatatcacaaaggcgcaa |
41207295 |
T |
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| Q |
393 |
actatgtctaattttaactcttgttc |
418 |
Q |
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||||| |||||||||||||||||||| |
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| T |
41207296 |
actatatctaattttaactcttgttc |
41207321 |
T |
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