View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8087_high_16 (Length: 422)
Name: NF8087_high_16
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_high_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 407
Target Start/End: Original strand, 30932603 - 30932996
Alignment:
| Q |
14 |
atagacatcacttttgtcactgacccttccagttttgtagtaatctggatcaatgtaagcatgagttcctaccagaaaagttgaaacatgggtaacattg |
113 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| ||| |||||||||||| || |||| | |
|
|
| T |
30932603 |
atagacatcacttttctcactgacccttccagtttcatagtaatctggatcaatgtaagcacgagttcccaccggaagagttgaaacatgagtcacatag |
30932702 |
T |
|
| Q |
114 |
tctggaagtaaacgtgagagtccaaaatctgcaactttaacagaaattttttcatccagcagaatattacttccttttatgtcacgatggatgatacctg |
213 |
Q |
| |
|
|| ||||| || || ||||| |||||||||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30932703 |
tcaggaagaaaccgcgagagaccaaaatctgcaactttaactgcaaaattttcatccagcagaatattgcttccttttatgtcacgatggatgatacctg |
30932802 |
T |
|
| Q |
214 |
agttatggagaaataccaaggcgttcgcaggttcaatggcaatattcaatctagtaagccatgatagtttattacatgaagatccgtgaagatgttgtgt |
313 |
Q |
| |
|
| | || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30932803 |
aatcgtgaagaaataccaaggcgttcgcagtttcaatggcaatattcaatctagtaagccatgatagtttattacatgaagattcgtgaagatgttgtgt |
30932902 |
T |
|
| Q |
314 |
aagagttccattagagatgtactcgtacacaggcatgtgcttgttgctatgacgagaactgcaaccataaagtgaaaccagattttgatgatgc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30932903 |
aagagttccattagagatgtactcgtacacaagcatgtacttgttgctatgacgagaactgcaaccataaagtgaaaccagattttgatgatgc |
30932996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 407
Target Start/End: Original strand, 30962947 - 30963340
Alignment:
| Q |
14 |
atagacatcacttttgtcactgacccttccagttttgtagtaatctggatcaatgtaagcatgagttcctaccagaaaagttgaaacatgggtaacattg |
113 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||| ||| |||||||||||| || |||| | |
|
|
| T |
30962947 |
atagacatcgcttttctcacttacccttccagtgtcatagtaatctggatcaatgtaagcacgagttcctaccggaagagttgaaacatgagtcacatag |
30963046 |
T |
|
| Q |
114 |
tctggaagtaaacgtgagagtccaaaatctgcaactttaacagaaattttttcatccagcagaatattacttccttttatgtcacgatggatgatacctg |
213 |
Q |
| |
|
|| ||||| || || ||||| |||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30963047 |
tcaggaagaaaccgcgagagaccaaaatctgcaactttaacagcaaaactttcatccagcagaatattgcttccttttatgtcacgatggatgatacctg |
30963146 |
T |
|
| Q |
214 |
agttatggagaaataccaaggcgttcgcaggttcaatggcaatattcaatctagtaagccatgatagtttattacatgaagatccgtgaagatgttgtgt |
313 |
Q |
| |
|
||| || |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
30963147 |
agtcgtgaagaaataccaaggcattcgcagtttcaatggcaatattcaatctagtaagccatgatagtttactaaatgaagatccgtgaagatgttgtgt |
30963246 |
T |
|
| Q |
314 |
aagagttccattagagatgtactcgtacacaggcatgtgcttgttgctatgacgagaactgcaaccataaagtgaaaccagattttgatgatgc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30963247 |
aagagttccattagagatgtactcgtacacaagcatgtgcttgttgctatgacgagaactgcaaccataaagtgaaaccagattttgatgatgc |
30963340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University