View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_high_23 (Length: 376)
Name: NF8087_high_23
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 8974026 - 8974385
Alignment:
| Q |
1 |
ggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974026 |
ggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaa |
8974125 |
T |
|
| Q |
101 |
tcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtaggagctgttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974126 |
tcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactctttttgatcaagtttctaatttgcttacagtaatagttgtaggagctgttat |
8974225 |
T |
|
| Q |
201 |
tatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatatatcattattaaccaaaccaatggagaaattatcaaagattac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974226 |
tatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatacatcattattaaccaaaccaatggagaaattatcaaagattac |
8974325 |
T |
|
| Q |
301 |
atacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatctttt |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974326 |
atacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatctttt |
8974385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 8962630 - 8962989
Alignment:
| Q |
1 |
ggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaa |
100 |
Q |
| |
|
|||||||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||| ||||| |||||| |
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| T |
8962630 |
ggagtctcactcaccggcttctcttcctatataggaaacttctctgctagtaatattcccattgttttcaaaggtatgtgtgacaattttacagaactaa |
8962729 |
T |
|
| Q |
101 |
tcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtaggagctgttat |
200 |
Q |
| |
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||| |||||| || ||||||| || |||||||||||||||| || |||| | ||||| ||| |||| || ||| || | ||||||||||||| || | |
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| T |
8962730 |
tcagagtgaagagcgagattgtggtttgtgaagacaagaatgaaagtctttctaatcaaatttataatgtggttaaagcagaagttgtaggagctatttt |
8962829 |
T |
|
| Q |
201 |
tatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatatatcattattaaccaaaccaatggagaaattatcaaagattac |
300 |
Q |
| |
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|||||||||||| ||||| || |||||||| || ||| ||| || |||||||| |||||||||||||| | ||||||||||| ||||||||||| |
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| T |
8962830 |
tatatcaaacacaacacaagatgatctatcagaagacttacggtacctgcttccatccatcattattaaccagaaaaatggagaaatggtcaaagattac |
8962929 |
T |
|
| Q |
301 |
atacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatctttt |
360 |
Q |
| |
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||||| ||||||| |||||| ||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
8962930 |
atacatagtaactttaactctagttcaatagaaaaaatgtctttcaagattacatctttt |
8962989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 8946434 - 8946351
Alignment:
| Q |
27 |
ttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaatcaaagtgaa |
110 |
Q |
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|||||||||||| ||||||||||| ||| | |||||||||||||||||| ||| |||||| ||||| || ||||||||||||| |
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| T |
8946434 |
ttatctaggaaatttctctgctagcaatttgccaattgttttcatgggtttgtgcgacaatgttacagaattaatcaaagtgaa |
8946351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 21687608 - 21687400
Alignment:
| Q |
1 |
ggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaa |
100 |
Q |
| |
|
|||||||||||| |||| || ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||| ||| | || ||| |
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| T |
21687608 |
ggagtctcactcactggtttgtctttctatctaggaaacttctctgctaacaattttccaattgtttttatgggtatgtgtgacaatgttaaagaattaa |
21687509 |
T |
|
| Q |
101 |
tcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtaggagctgttat |
200 |
Q |
| |
|
|| |||||| || |||||||| || ||||||| ||| |||| |||||||| ||| ||| | | |||| || || || || |||||| |||| |||| | |
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| T |
21687508 |
acacagtgaagagaaagattgtggtttgtgaaggcaataatgaaactcttcatgaacaaatgtttaatgtgtataaagcaaaagttgttggaggtgtttt |
21687409 |
T |
|
| Q |
201 |
tatatcaaa |
209 |
Q |
| |
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||||||||| |
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|
| T |
21687408 |
tatatcaaa |
21687400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 34963123 - 34963079
Alignment:
| Q |
103 |
aaagtgaaaagtaagattgttgtctgtgaagacaagaatggaact |
147 |
Q |
| |
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||||||||||| |||||| | || ||||||||||||||||||||| |
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|
| T |
34963123 |
aaagtgaaaagcaagattatagtgtgtgaagacaagaatggaact |
34963079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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