View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8087_high_28 (Length: 311)

Name: NF8087_high_28
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8087_high_28
NF8087_high_28
[»] chr3 (12 HSPs)
chr3 (253-311)||(10335341-10335399)
chr3 (253-311)||(24205096-24205154)
chr3 (253-311)||(3164080-3164138)
chr3 (253-311)||(10268541-10268599)
chr3 (253-303)||(10318103-10318153)
chr3 (253-311)||(15796349-15796407)
chr3 (253-311)||(16000071-16000129)
chr3 (253-311)||(25093448-25093506)
chr3 (253-311)||(750673-750732)
chr3 (253-311)||(7171448-7171506)
chr3 (253-303)||(14027961-14028011)
chr3 (253-311)||(23657687-23657744)
[»] scaffold0027 (1 HSPs)
scaffold0027 (253-311)||(46628-46686)
[»] chr8 (10 HSPs)
chr8 (253-311)||(926843-926901)
chr8 (272-311)||(25192402-25192441)
chr8 (253-311)||(29510359-29510417)
chr8 (50-123)||(32019090-32019163)
chr8 (253-311)||(22651922-22651980)
chr8 (253-303)||(43737876-43737926)
chr8 (272-311)||(4673480-4673519)
chr8 (253-311)||(27101461-27101519)
chr8 (253-311)||(44067462-44067520)
chr8 (253-302)||(24413624-24413673)
[»] chr6 (18 HSPs)
chr6 (253-311)||(8777028-8777086)
chr6 (253-311)||(426569-426627)
chr6 (253-311)||(7938062-7938120)
chr6 (253-311)||(9107425-9107483)
chr6 (257-311)||(3209332-3209385)
chr6 (253-311)||(9027124-9027182)
chr6 (253-311)||(16766643-16766701)
chr6 (266-311)||(2153942-2153987)
chr6 (255-311)||(5732565-5732621)
chr6 (260-304)||(28715256-28715300)
chr6 (272-311)||(3398584-3398623)
chr6 (252-311)||(17168518-17168577)
chr6 (251-310)||(23130535-23130594)
chr6 (253-311)||(10339181-10339239)
chr6 (253-311)||(18367783-18367840)
chr6 (253-303)||(34225864-34225914)
chr6 (266-311)||(6898336-6898381)
chr6 (271-311)||(34595098-34595138)
[»] chr7 (14 HSPs)
chr7 (252-311)||(11061131-11061190)
chr7 (253-311)||(25481848-25481906)
chr7 (253-311)||(5235932-5235990)
chr7 (253-303)||(9778454-9778504)
chr7 (253-310)||(26329438-26329495)
chr7 (272-311)||(27945006-27945045)
chr7 (165-200)||(38094913-38094948)
chr7 (253-311)||(1433400-1433458)
chr7 (253-311)||(12278776-12278833)
chr7 (273-311)||(13770657-13770695)
chr7 (253-311)||(18213089-18213147)
chr7 (248-305)||(5409897-5409954)
chr7 (271-311)||(11722153-11722193)
chr7 (271-311)||(43249957-43249997)
[»] scaffold0053 (1 HSPs)
scaffold0053 (253-311)||(8744-8802)
[»] scaffold0007 (1 HSPs)
scaffold0007 (253-311)||(225323-225381)
[»] chr5 (15 HSPs)
chr5 (253-311)||(6401444-6401502)
chr5 (253-311)||(15382423-15382481)
chr5 (253-311)||(21522696-21522754)
chr5 (253-311)||(21533262-21533320)
chr5 (256-311)||(13287454-13287509)
chr5 (264-311)||(19552598-19552645)
chr5 (272-311)||(22013379-22013418)
chr5 (252-311)||(41995416-41995475)
chr5 (273-311)||(6247588-6247626)
chr5 (253-311)||(15410503-15410561)
chr5 (253-303)||(32766998-32767048)
chr5 (253-310)||(6326353-6326410)
chr5 (254-287)||(30502467-30502500)
chr5 (254-287)||(30542810-30542843)
chr5 (275-311)||(36642817-36642853)
[»] chr4 (9 HSPs)
chr4 (253-311)||(20633431-20633489)
chr4 (256-303)||(21873426-21873473)
chr4 (256-303)||(21929287-21929334)
chr4 (253-311)||(19482614-19482672)
chr4 (253-311)||(23293041-23293099)
chr4 (253-311)||(24343453-24343511)
chr4 (252-306)||(30982935-30982989)
chr4 (281-310)||(16303322-16303351)
chr4 (260-309)||(35158042-35158091)
[»] chr2 (4 HSPs)
chr2 (253-311)||(18276467-18276525)
chr2 (253-303)||(30527664-30527714)
chr2 (275-311)||(18421931-18421967)
chr2 (251-311)||(21616706-21616766)
[»] chr1 (11 HSPs)
chr1 (253-311)||(398820-398878)
chr1 (253-311)||(10577790-10577848)
chr1 (253-311)||(16297338-16297396)
chr1 (253-311)||(48548017-48548075)
chr1 (253-311)||(2896176-2896234)
chr1 (254-311)||(9709767-9709824)
chr1 (268-311)||(40917712-40917755)
chr1 (272-311)||(48040517-48040556)
chr1 (269-311)||(15641085-15641127)
chr1 (253-311)||(47989444-47989502)
chr1 (254-303)||(23531841-23531890)
[»] scaffold0116 (1 HSPs)
scaffold0116 (253-311)||(9844-9902)
[»] scaffold0475 (1 HSPs)
scaffold0475 (253-310)||(3262-3319)
[»] scaffold0003 (1 HSPs)
scaffold0003 (271-311)||(241558-241598)
[»] scaffold0652 (1 HSPs)
scaffold0652 (252-311)||(517-576)
[»] scaffold0126 (1 HSPs)
scaffold0126 (253-310)||(19091-19148)
[»] scaffold0018 (2 HSPs)
scaffold0018 (282-311)||(192304-192333)
scaffold0018 (275-311)||(178874-178910)


Alignment Details
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 10335399 - 10335341
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  10335399 atgaagcacggatacgaacacggacaccggacacgacacggacactgacacgccgacac 10335341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 24205154 - 24205096
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  24205154 atgaagcacggacacagacacggacaccggacacgacacggacactgacacgccgacac 24205096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 3164138 - 3164080
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||| ||||||||| ||||||||| ||||||| || |||| ||||||    
T  3164138 atgaagcacggatacagacacggacaccggacacgacacggacaatggcacgtcgacac 3164080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 10268599 - 10268541
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||| |||||||||||||   |||| | ||||||||||||||||||||    
T  10268599 atgaagcacggatacgaacacggacatcgattacgacatggacactgacacgccgacac 10268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 10318153 - 10318103
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacac 303  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||| |||||    
T  10318153 atgaagcacggatacgaacacggacaccggacacgacacggacacggacac 10318103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 15796407 - 15796349
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||   ||||||||| ||||||||| ||||||| ||||||||||||||    
T  15796407 atgaagcacggatatggacacggacaccggacacgacacggacaatgacacgccgacac 15796349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 16000129 - 16000071
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||||||||| || |||||| || |||||||||||||||||||    
T  16000129 atgaagcacggatacggacacggacaccgaacacgacacagacactgacacgccgacac 16000071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 25093448 - 25093506
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||| |||||||||||||| |||| ||||||||| || |||||| ||||||||||||    
T  25093448 atgaagtacggatacaaacacagacaccggacacgacactgacactaacacgccgacac 25093506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 750732 - 750673
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacac-tgacacgccgacac 311  Q
    |||||||||||||||  ||||||||| ||||||||| |||||||| ||||||| ||||||    
T  750732 atgaagcacggatacggacacggacaccggacacgacacggacacttgacacggcgacac 750673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 7171448 - 7171506
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  |||| |||| ||||||||| ||||| ||||||| ||||||||    
T  7171448 atgaagcacggatacggacacagacaccggacacgacacggatactgacatgccgacac 7171506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 14027961 - 14028011
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacac 303  Q
    |||||||||||||||  ||||||||| ||||||||| |||||||| |||||    
T  14027961 atgaagcacggatacggacacggacaccggacacgacacggacaccgacac 14028011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 23657687 - 23657744
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||  |||| |||| ||||||||||||||||||||||||||| | ||||||||    
T  23657687 atgaagcacatatacgaaca-ggacatcggacacgatacggacactgatatgccgacac 23657744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 46628 - 46686
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||||||||||||||||||| ||||||| ||||||||||||||    
T  46628 atgaagcacggatacggacacggacatcggacacgacacggacaatgacacgccgacac 46686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 926901 - 926843
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||    
T  926901 atgaagcacggatacgaacacggacaccggacacgacacggacactgacacgccaacac 926843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 25192441 - 25192402
Alignment:
Q  272 acggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25192441 acggacatcggacacgatacggacactgacacgccgacac 25192402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 29510417 - 29510359
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||| ||||| ||||||||| ||||||||||||||||||||||    
T  29510417 atgaagcacggatactgacatggacaccggacacgacacggacactgacacgccgacac 29510359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 32019090 - 32019163
Alignment:
Q  50 aagaatatcagagattaataacgtttccctcaatcactcacactatgtttatcaaaccttacttcttaacctaa 123  Q
    |||||| | |||||||||||||||||||||  ||| |||||||||| || ||||||||||||| ||||| ||||    
T  32019090 aagaatgttagagattaataacgtttccctggatcgctcacactatattcatcaaaccttactacttaatctaa 32019163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 22651922 - 22651980
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||| ||||||||  |||| |||| ||||||||| ||||||||||||||||||||||    
T  22651922 atgaagtacggatacggacactgacaccggacacgacacggacactgacacgccgacac 22651980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 43737926 - 43737876
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacac 303  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  43737926 atgaagcacggatacagacacggacaccggacacgacacggacaccgacac 43737876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 4673519 - 4673480
Alignment:
Q  272 acggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  4673519 acggacatcggacacgacacagacactgacacgccgacac 4673480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 27101461 - 27101519
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||| ||||||| |||| ||||||| | |||||| ||||| ||||||||||||||    
T  27101461 atgaagcatggatacagacaccgacatcgaatacgatatggacattgacacgccgacac 27101519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 44067462 - 44067520
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||| ||| ||||||||| | ||||| | || |||||||||||||||||||    
T  44067462 atgaagcacggacacagacacggacaccagacaccacaccgacactgacacgccgacac 44067520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 24413673 - 24413624
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgaca 302  Q
    |||||||||||||||  ||||||||| | ||||||| |||||||||||||    
T  24413673 atgaagcacggatacggacacggacaccagacacgacacggacactgaca 24413624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 8777086 - 8777028
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||||||||| ||||||||| ||||||||||||||||||||||    
T  8777086 atgaagcacggatacggacacggacaacggacacgacacggacactgacacgccgacac 8777028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 426627 - 426569
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||| ||||||| ||||||| | ||||||||| ||||||||||||||||||||||    
T  426627 atgaagcatggatacagacacggataccggacacgacacggacactgacacgccgacac 426569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 7938062 - 7938120
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||||||||| ||||||||| | ||||||||||||||||||||    
T  7938062 atgaagcacggatacggacacggacaccggacacgacatggacactgacacgccgacac 7938120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 9107483 - 9107425
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||||||||| ||||||||| ||||||||| ||||||||||||    
T  9107483 atgaagcacggatactgacacggacaccggacacgacacggacactaacacgccgacac 9107425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 3209332 - 3209385
Alignment:
Q  257 agcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||||||||| ||||||||| || ||||| |||||||||||||    
T  3209332 agcacggatacaaacacggacaccggacacgacac-gacacagacacgccgacac 3209385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 9027124 - 9027182
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||| |||||  ||||||||  ||||||||| ||||||||||||||||||||||    
T  9027124 atgaagcaccgatacggacacggactccggacacgacacggacactgacacgccgacac 9027182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 16766643 - 16766701
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||| ||||||  ||||||||| ||||||||| | ||||||||||||||||||||    
T  16766643 atgaagcatggatacggacacggacaccggacacgacatggacactgacacgccgacac 16766701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 2153987 - 2153942
Alignment:
Q  266 acaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||||||| || |||||||| |||||||||||||    
T  2153987 acaaacacggacatcggacatgacacggacaccgacacgccgacac 2153942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 5732621 - 5732565
Alignment:
Q  255 gaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||| ||||||| |||||||||  |||||||| | ||||||||||||||||||||    
T  5732621 gaagcatggatacagacacggacactggacacgacatggacactgacacgccgacac 5732565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 28715256 - 28715300
Alignment:
Q  260 acggatacaaacacggacatcggacacgatacggacactgacacg 304  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||    
T  28715256 acggatacggacacggacaccggacacgatacggacactgacacg 28715300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 3398584 - 3398623
Alignment:
Q  272 acggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  3398584 acggacatcgaacacgacacggacactgacacgccgacac 3398623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 17168577 - 17168518
Alignment:
Q  252 aatgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||| ||||||||||||| |||||||| || |  |||||||||||||| ||||    
T  17168577 aatgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgccaacac 17168518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 23130594 - 23130535
Alignment:
Q  251 caatgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgaca 310  Q
    ||||||| |||||||||| ||||||||||| ||||| | || |||||||||| |||||||    
T  23130594 caatgaaacacggatacagacacggacatcagacacaacactgacactgacatgccgaca 23130535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 10339239 - 10339181
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||| ||| |||||  |||||||| | | ||||||||||||||||||    
T  10339239 atgaagcacggatacagacatggacacaggacacgacatgaacactgacacgccgacac 10339181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 18367783 - 18367840
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||||||||| ||||||||| | |||||| |||||||||||||    
T  18367783 atgaagcacggatacggacacggacaccggacacgacatggacac-gacacgccgacac 18367840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 34225914 - 34225864
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacac 303  Q
    |||||||||||||||  |||||||||  |||||||||| ||||||||||||    
T  34225914 atgaagcacggatacggacacggacactggacacgataaggacactgacac 34225864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 6898381 - 6898336
Alignment:
Q  266 acaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||| ||| ||||||||||| |||||||||||||| |||||    
T  6898381 acaaacacgaacaacggacacgatatggacactgacacgctgacac 6898336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 34595098 - 34595138
Alignment:
Q  271 cacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||| ||||||||| ||||||| ||||||||||||||    
T  34595098 cacggacaccggacacgacacggacaatgacacgccgacac 34595138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 11061190 - 11061131
Alignment:
Q  252 aatgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||||  |||||||||||||| |||| |||||||||||||| |||||||    
T  11061190 aatgaagcacggatacggacacggacatcggatacgacacggacactgacacaccgacac 11061131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 25481848 - 25481906
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||| ||||||||||||||||| | | ||||| ||||||||||||||    
T  25481848 atgaagcacggatacagacacggacatcggacacaacatggacaatgacacgccgacac 25481906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 5235932 - 5235990
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||| |||||||| |||||||| |||||||| || |||||||||||| ||||||    
T  5235932 atgaagcacagatacaaatacggacattggacacgacacagacactgacacgtcgacac 5235990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 9778454 - 9778504
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacac 303  Q
    |||||||||||||||  ||||||||| ||||||||| ||||||||||||||    
T  9778454 atgaagcacggatacggacacggacaccggacacgacacggacactgacac 9778504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 26329495 - 26329438
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgaca 310  Q
    |||||||||| ||||| |||||||||  |||||||| || ||||||||||||||||||    
T  26329495 atgaagcacgaatacagacacggacactggacacgacacagacactgacacgccgaca 26329438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 27945006 - 27945045
Alignment:
Q  272 acggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  27945006 acggacaccggacacgacacggacactgacacgccgacac 27945045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 38094913 - 38094948
Alignment:
Q  165 tttcaattgacatcaattcacattgatttcacacct 200  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38094913 tttcaattgacatcaattcacatggatttcacacct 38094948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 1433400 - 1433458
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||   |||||||| || |||||| ||||||| ||||||||||||||    
T  1433400 atgaagcacggatacgggcacggacaccgaacacgacacggacattgacacgccgacac 1433458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 12278776 - 12278833
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||| ||| || |||||||||||||| ||||||||||||| ||| ||||    
T  12278776 atgaagcacggataaaaa-acagacatcggacacgacacggacactgacaagccaacac 12278833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 13770657 - 13770695
Alignment:
Q  273 cggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  13770657 cggacatcggacacgacacggacactgatacgccgacac 13770695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 18213147 - 18213089
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||| ||||| |||||| ||| | ||||||| ||||||||||| ||||||||||    
T  18213147 atgaagcacagatacgaacacgaacaccagacacgacacggacactgatacgccgacac 18213089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 5409954 - 5409897
Alignment:
Q  248 taacaatgaagcacggatacaaacacggacatcggacacgatacggacactgacacgc 305  Q
    |||| |||||||||||||||| |||| |||| |||| |||| | ||||||||||||||    
T  5409954 taactatgaagcacggatacagacacagacaccggatacgacatggacactgacacgc 5409897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 11722193 - 11722153
Alignment:
Q  271 cacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  11722193 cacggataccggacacgacacggacactgacacgccgacac 11722153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 43249957 - 43249997
Alignment:
Q  271 cacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||| |||||| || ||||||||||||||||||||||    
T  43249957 cacggacaccggacaagacacggacactgacacgccgacac 43249997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 8744 - 8802
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||| ||||||  ||||||||| ||||||||| ||||||||||||||||||||||    
T  8744 atgaagcatggatacggacacggacaccggacacgacacggacactgacacgccgacac 8802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 225381 - 225323
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||| |||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  225381 atgaaacacggacacagacacggacaccggacacgacacggacactgacacgccgacac 225323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 6401444 - 6401502
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||| ||||||||| ||||| ||| |||||||| |||||||||||||    
T  6401444 atgaagcacggatacagacacggacaccggacgcgacacggacaccgacacgccgacac 6401502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 15382423 - 15382481
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||||||||| ||||||||| ||||||| ||||||||||||||    
T  15382423 atgaagcacggatacggacacggacaccggacacgacacggacaatgacacgccgacac 15382481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 21522696 - 21522754
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  |||||| || ||||||||| ||||||||||||||||||||||    
T  21522696 atgaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacac 21522754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 21533262 - 21533320
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  |||||| || ||||||||| ||||||||||||||||||||||    
T  21533262 atgaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacac 21533320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 13287509 - 13287454
Alignment:
Q  256 aagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||  ||||||||| ||||||||| ||||||||| ||||| ||||||    
T  13287509 aagcacggatacggacacggacaccggacacgacacggacactaacacgtcgacac 13287454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 19552645 - 19552598
Alignment:
Q  264 atacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||| || || |||||| ||||||||||||||||||||||    
T  19552645 atacaaacacggccaccgaacacgacacggacactgacacgccgacac 19552598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 22013379 - 22013418
Alignment:
Q  272 acggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  22013379 acggacaccggacacgacacggacactgacacgccgacac 22013418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 41995416 - 41995475
Alignment:
Q  252 aatgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||||  |||||||||  ||| |||| || |||||||||||||||||||    
T  41995416 aatgaagcacggatacggacacggacactggatacgacacagacactgacacgccgacac 41995475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 6247588 - 6247626
Alignment:
Q  273 cggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  6247588 cggacaccggacacgatacgcacactgacacgccgacac 6247626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 15410561 - 15410503
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||| |||||||||  ||  ||||||| ||||||| ||||||||||||||||||||||    
T  15410561 atgaaacacggatacggacgtggacatcagacacgacacggacactgacacgccgacac 15410503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 32767048 - 32766998
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacac 303  Q
    ||||||||||||||||||||| ||||  |||||||| |||||||| |||||    
T  32767048 atgaagcacggatacaaacacagacactggacacgacacggacaccgacac 32766998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 6326410 - 6326353
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgaca 310  Q
    |||||||| |||||   ||||||| | ||||||||| |||||||||||||||||||||    
T  6326410 atgaagcatggataaggacacggataccggacacgacacggacactgacacgccgaca 6326353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 30502500 - 30502467
Alignment:
Q  254 tgaagcacggatacaaacacggacatcggacacg 287  Q
    ||||||||||||||||||||||||| ||||||||    
T  30502500 tgaagcacggatacaaacacggacaccggacacg 30502467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 30542843 - 30542810
Alignment:
Q  254 tgaagcacggatacaaacacggacatcggacacg 287  Q
    ||||||||||||||||||||||||| ||||||||    
T  30542843 tgaagcacggatacaaacacggacaccggacacg 30542810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 36642853 - 36642817
Alignment:
Q  275 gacatcggacacgatacggacactgacacgccgacac 311  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  36642853 gacaccggacacgacacggacactgacacgccgacac 36642817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 20633431 - 20633489
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||||||||| | ||||||||||||||||||||||| ||||||    
T  20633431 atgaagcacggatacggacacggacaccagacacgatacggacactgacacgtcgacac 20633489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 21873473 - 21873426
Alignment:
Q  256 aagcacggatacaaacacggacatcggacacgatacggacactgacac 303  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  21873473 aagcacggatacagacacggacattggacacgacacggacactgacac 21873426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 21929334 - 21929287
Alignment:
Q  256 aagcacggatacaaacacggacatcggacacgatacggacactgacac 303  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  21929334 aagcacggatacagacacggacattggacacgacacggacactgacac 21929287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 19482614 - 19482672
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||| ||||| |||| | ||||||| || |||||||||||||||||||    
T  19482614 atgaagcacggatacgaacacagacaccagacacgacacagacactgacacgccgacac 19482672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 23293099 - 23293041
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||| |||||  ||||||||| ||||||||| ||||||| ||||||||||||||    
T  23293099 atgaagcacagatacggacacggacaccggacacgacacggacaatgacacgccgacac 23293041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 24343453 - 24343511
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||| ||| ||||||||| ||||||||| |||||| | |||||||||||||    
T  24343453 atgaagcacggacacagacacggacaccggacacgacacggacgccgacacgccgacac 24343511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 30982989 - 30982935
Alignment:
Q  252 aatgaagcacggatacaaacacggacatcggacacgatacggacactgacacgcc 306  Q
    |||||||||||||||| |||| ||||| |||| |||| |||||||| ||||||||    
T  30982989 aatgaagcacggatacgaacatggacaccggatacgacacggacacagacacgcc 30982935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 310
Target Start/End: Complemental strand, 16303351 - 16303322
Alignment:
Q  281 ggacacgatacggacactgacacgccgaca 310  Q
    ||||||||||||||||||||||||||||||    
T  16303351 ggacacgatacggacactgacacgccgaca 16303322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 35158091 - 35158042
Alignment:
Q  260 acggatacaaacacggacatcggacacgatacggacactgacacgccgac 309  Q
    ||||||||  ||||||||| ||||||| | ||||||||||||||||||||    
T  35158091 acggatacggacacggacaccggacacaacacggacactgacacgccgac 35158042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 18276467 - 18276525
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||| ||||||||| |||||||||||| |||||||| | ||||||||    
T  18276467 atgaagcacggatacagacacggacaccggacacgatacagacactgatatgccgacac 18276525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 30527714 - 30527664
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacac 303  Q
    |||||||||  ||||||||||||| |||| |||||| ||||||||||||||    
T  30527714 atgaagcacatatacaaacacggatatcgaacacgacacggacactgacac 30527664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 18421931 - 18421967
Alignment:
Q  275 gacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  18421931 gacatcggatacgacacggacactgacacgccgacac 18421967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 21616706 - 21616766
Alignment:
Q  251 caatgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||||  |||| ||||   ||||||| |||||||| |||||||||||||    
T  21616706 caatgaagcacggatacggacacagacacatgacacgacacggacacggacacgccgacac 21616766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 398878 - 398820
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  || |||||| ||||||||| ||||||||||||||||||||||    
T  398878 atgaagcacggatacggacgcggacaccggacacgacacggacactgacacgccgacac 398820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 10577848 - 10577790
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||||||||| ||||||||| |||||||| |||||||||||||    
T  10577848 atgaagcacggatacggacacggacaccggacacgacacggacaccgacacgccgacac 10577790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 16297396 - 16297338
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||| ||||||||||||||||||||| ||||||||| ||||||    
T  16297396 atgaagcacggatacggacatggacatcggacacgatacggatactgacacgtcgacac 16297338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 48548075 - 48548017
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||||||||| ||||||| ||||||||| ||||||||||||||    
T  48548075 atgaagcacggatacggacacggacaccggacacaatacggacaatgacacgccgacac 48548017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 2896234 - 2896176
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||| |||||||||  |||||||| ||||||| | ||||||||||||||||||||||    
T  2896234 atgaagaacggatacagtcacggacaacggacacaacacggacactgacacgccgacac 2896176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 9709767 - 9709824
Alignment:
Q  254 tgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| ||||    
T  9709767 tgaagcacggatacagacatggacatcagacacgacacggacactgacatgcctacac 9709824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 40917712 - 40917755
Alignment:
Q  268 aaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||    
T  40917712 aaacacggacaccggacacgacacggatactgacacgccgacac 40917755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 48040556 - 48040517
Alignment:
Q  272 acggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  48040556 acggacaccggacacgacacggacactgacacgccgacac 48040517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 15641127 - 15641085
Alignment:
Q  269 aacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||||| || ||||||||||||| ||||||||    
T  15641127 aacacggacatcggacatgacacggacactgacatgccgacac 15641085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 47989444 - 47989502
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||| ||||||| ||||||| | | ||||||| || |||||||||||||||||||    
T  47989444 atgaagcatggatacagacacggataccagacacgacacagacactgacacgccgacac 47989502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 23531890 - 23531841
Alignment:
Q  254 tgaagcacggatacaaacacggacatcggacacgatacggacactgacac 303  Q
    ||||||||||||||  |||||||||  ||||||||||||||||| |||||    
T  23531890 tgaagcacggatacggacacggacactggacacgatacggacaccgacac 23531841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 9844 - 9902
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||||||||||  ||||||||| ||||||||| | |||||| |||||||||||||    
T  9844 atgaagcacggatacggacacggacaccggacacgacatggacaccgacacgccgacac 9902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 3262 - 3319
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgaca 310  Q
    |||||||||||||| | ||||||||| ||||||||| ||||| ||||||||| |||||    
T  3262 atgaagcacggatatagacacggacaccggacacgacacggatactgacacgtcgaca 3319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 241558 - 241598
Alignment:
Q  271 cacggacatcggacacgatacggacactgacacgccgacac 311  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  241558 cacggacaccggacacgacacggacactgacacgccgacac 241598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 576 - 517
Alignment:
Q  252 aatgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||||  ||||||||| || |||||  ||||||||||| ||||||||||    
T  576 aatgaagcacggatacggacacggacaccgaacacgccacggacactgatacgccgacac 517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 19091 - 19148
Alignment:
Q  253 atgaagcacggatacaaacacggacatcggacacgatacggacactgacacgccgaca 310  Q
    |||||||||||| ||| ||||||||||| || | || ||||||||| |||||||||||    
T  19091 atgaagcacggacacagacacggacatcagatatgacacggacactaacacgccgaca 19148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 311
Target Start/End: Complemental strand, 192333 - 192304
Alignment:
Q  282 gacacgatacggacactgacacgccgacac 311  Q
    ||||||||||||||||||||||||||||||    
T  192333 gacacgatacggacactgacacgccgacac 192304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 178910 - 178874
Alignment:
Q  275 gacatcggacacgatacggacactgacacgccgacac 311  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  178910 gacaccggacacgacacggacactgacacgccgacac 178874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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