View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_high_30 (Length: 291)
Name: NF8087_high_30
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_high_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 51651543 - 51651259
Alignment:
| Q |
7 |
tcgaagaatatggcaatgctcagttccgtagaccttctcaagtcgttggccacaagtagttccgactgcatcggggagaagacgggtgatctgtatttaa |
106 |
Q |
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| T |
51651543 |
tcgaagaatgtggcaatgctcagttccgtagaccttctcaagtcgttggccacaagtcgttccgactgcatcggggagaagacgggtgatctgtatttaa |
51651444 |
T |
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| Q |
107 |
caagaacatacatccacaagtaccaaccaattagagaattatccataaacaatatacaagtaagctaaattcatagaattttttgcttatttttgaaacc |
206 |
Q |
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| T |
51651443 |
caagaacatacatccacaagtaccaaccaattagagaattatccatacacaatatacaagtaagctacattcatagaattttttgcttatttttgaaacc |
51651344 |
T |
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| Q |
207 |
aagagagtacaatattatgacttacaatgagaatgcgagggatgatatccaagccttgttttttaatgcgactgagcatctcgct |
291 |
Q |
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| T |
51651343 |
gagagagtacaatattatgacttacaatgagaatgcgagggatgatatccaagccttgtttcttaatgcgactgagcatctcgct |
51651259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 19154348 - 19154450
Alignment:
| Q |
7 |
tcgaagaatatggcaatgctcagttccgtagaccttctcaagtcgttggccacaagtagttccgactgcatcggggagaagacgggtgatctgtatttaa |
106 |
Q |
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||||||||| |||||||| || || |||| || |||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||| |||||| |
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| T |
19154348 |
tcgaagaatgtggcaatgttcggtatcgtatactttctcaagacgttcaccacaagtagttcccactgcatcagggagaagacgggtgatctgcatttaa |
19154447 |
T |
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| Q |
107 |
caa |
109 |
Q |
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||| |
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| T |
19154448 |
caa |
19154450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 19154528 - 19154588
Alignment:
| Q |
229 |
tacaatgagaatgcgagggatgatatccaagccttgttttttaatgcgactgagcatctcg |
289 |
Q |
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| T |
19154528 |
tacaatgagaatgcgaggtttgatatccaagccttgttgcttgatacgtctgagcatctcg |
19154588 |
T |
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