View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8087_high_36 (Length: 266)
Name: NF8087_high_36
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_high_36 |
 | |
|
| [»] scaffold0536 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 48911360 - 48911608
Alignment:
| Q |
1 |
aggcaaagatgatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatccctctatgcgacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48911360 |
aggcaaagatgatgaatacggaagaaggagaagagaaagcacttaccatctacttcataccttacttagcacctggccacatgatccctctatgcgacat |
48911459 |
T |
|
| Q |
101 |
agcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacacctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48911460 |
agcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacacctt |
48911559 |
T |
|
| Q |
201 |
cgtattcacactgttccatttccttcacaagcagtaggcctccccgatg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48911560 |
cgtattcacactgttccatttccttcacaagcagtaggcctccccgatg |
48911608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 226
Target Start/End: Complemental strand, 48975193 - 48975036
Alignment:
| Q |
69 |
gcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatcc |
168 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || || |||||||||| | || |||| |||| |||||||| ||||| ||||| ||||| |||||| |
|
|
| T |
48975193 |
gcacctggccacatgacccctctatgcgacattgctacactctttgcctcatgcggtcaccatgttaccatcattaccactccctctaatgcccaaatca |
48975094 |
T |
|
| Q |
169 |
ttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttc |
226 |
Q |
| |
|
|| |||||| || |||| || | ||||| || |||| ||||||||||||||||| |
|
|
| T |
48975093 |
ttctcaaatccatcccttctcacaaccacctccgccttcatactgttccatttccttc |
48975036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 48952342 - 48952213
Alignment:
| Q |
51 |
tacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacac |
150 |
Q |
| |
|
|||||||| || ||||||||| | || |||||||||||| |||| |||||||| |||||||||| | ||| |||| ||| || ||||||||||| | |
|
|
| T |
48952342 |
tacttcattccatacttagcagcagggcacatgatccctttatgtgacatagcttctctctttgcttcacgtggtcactttgttacaatcataaccactc |
48952243 |
T |
|
| Q |
151 |
cctccaatgctcaaatccttggcaaatcta |
180 |
Q |
| |
|
|| |||||| |||||||| |||||||| |
|
|
| T |
48952242 |
attcaaatgctaaaatccttcccaaatcta |
48952213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 5536 - 5774
Alignment:
| Q |
11 |
gatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctc |
110 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||| || ||||||||| |||| ||||||||||| ||| |
|
|
| T |
5536 |
gatggatatggaagaaggagaagagaaagcacttactatctacttcataccttacttagctcctggtcatatgatccctttatgtgacatagcaacactc |
5635 |
T |
|
| Q |
111 |
tttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacaccttcgtattcaca |
210 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| |
|
|
| T |
5636 |
tttgccttacgccgtcaaaaagttaccatcataaccacaccctccaatgctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcaca |
5735 |
T |
|
| Q |
211 |
ctgttccatttccttcacaagcagtaggcctccccgatg |
249 |
Q |
| |
|
| |||||||||||||| || | ||| |||||||| |||| |
|
|
| T |
5736 |
ccgttccatttccttcccatgaagttggcctccctgatg |
5774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 9553 - 9756
Alignment:
| Q |
28 |
gagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtca |
127 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||||| ||||||| || ||||||||||||||||||||| ||||| |||| |
|
|
| T |
9553 |
gagaagagaaagcacttaaaatctacttcataccttacttatcacctggtcatatgatccctctatgcgacata----------------tacgctgtca |
9636 |
T |
|
| Q |
128 |
aaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttca |
227 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
9637 |
aaatgttaccatcataaccacaccttccaacgctcaaatccttggcaaatctatccctttaaaccaacatctccgtattcacactgttccatttccttcc |
9736 |
T |
|
| Q |
228 |
caagcagtaggcctccccga |
247 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
9737 |
caagaagtaggcctccccga |
9756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University