View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_high_40 (Length: 242)
Name: NF8087_high_40
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 51651287 - 51651065
Alignment:
| Q |
1 |
tgtttcttaatgcgactgagcatctcgctctccaaggcacgaacttgatccaagatgtaaacaacctatattgaagatcaagtaaagcatgtgagttaaa |
100 |
Q |
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| T |
51651287 |
tgtttcttaatgcgactgagcatctcgctctccaaggcacgaacttgatccaagatgtaaacaacctatattgaagatcaagtaaagcatgtgagttaaa |
51651188 |
T |
|
| Q |
101 |
cttgataggtataatagtatgagattctcatagacaaacaaaacatttcatgttaaactaacctggcctccagtatcagggtatcccaagacatcatctt |
200 |
Q |
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| T |
51651187 |
cttgataggtataatagtatgagattctcatagacaaacaaaacatttcatgttaaactaacctggcctccagtatcagggtatcccaagacatcatctt |
51651088 |
T |
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| Q |
201 |
gagcaaagtaaccatgaggagaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
51651087 |
gagcaaagtaaccatgaggagaa |
51651065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 19154786 - 19154853
Alignment:
| Q |
156 |
aactaacctggcctccagtatcagggtatcccaagacatcatcttgagcaaagtaaccatgaggagaa |
223 |
Q |
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| T |
19154786 |
aactaacctgtccaccggtatcagggtatcccaagacattatcttgggcgaagtaaccatgtggagaa |
19154853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 19154577 - 19154634
Alignment:
| Q |
16 |
ctgagcatctcgctctccaaggcacgaacttgatccaagatgtaaacaacctatattg |
73 |
Q |
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|||||||||||| ||||||||||||| ||||| ||||| ||||| ||||||||||||| |
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| T |
19154577 |
ctgagcatctcgttctccaaggcacggacttggtccaaaatgtacacaacctatattg |
19154634 |
T |
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