View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8087_high_42 (Length: 240)
Name: NF8087_high_42
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_high_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 35497145 - 35496932
Alignment:
| Q |
10 |
cacacacgcacttcttcatgatgatcacacacatagtataacaaaattcattttcaaaataggttttcatctctagttttacaatagtatttaaatatca |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| |||||| ||||||||||||| |
|
|
| T |
35497145 |
cacacacacacttcttcatgatgatcacacacatagtataacaaaaatcattttcaaaataggttttcatctttactttaacaataatatttaaatatca |
35497046 |
T |
|
| Q |
110 |
accgattcatttctttaatttccaccaataatcataatccctcttcccttaggtatcaaattcttcatggcccaatcacaatcaggacataccgcggctg |
209 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | | |||||||||| |
|
|
| T |
35497045 |
accgattcatttgattaattaccaccaacaatcataatccctcttccgttagttatcaaattcttcatggcccaatcacaatcagaaaacaccgcggctg |
35496946 |
T |
|
| Q |
210 |
tggacgccatcttt |
223 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35496945 |
tggacgccatcttt |
35496932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 35496088 - 35495875
Alignment:
| Q |
10 |
cacacacgcacttcttcatgatgatcacacacatagtataacaaaattcattttcaaaataggttttcatctctagttttacaatagtatttaaatatca |
109 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
35496088 |
cacacacacatttcttcatgatgatcacacacataatataacaaaaataattttcaaaataggttttcatctctacttttacaataatatttaaatatca |
35495989 |
T |
|
| Q |
110 |
accgattcatttctttaatttccaccaataatcataatccctcttcccttaggtatcaaattcttcatggcccaatcacaatcaggacataccgcggctg |
209 |
Q |
| |
|
|||||||||||| |||||| | ||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
35495988 |
accgattcatttgattaattactaccaacaatcataattcctcttcccttagttattaaattcttcatggcccaatcacaatcaggacacaccgcagctg |
35495889 |
T |
|
| Q |
210 |
tggacgccatcttt |
223 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35495888 |
tggacgccatcttt |
35495875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 35494100 - 35493887
Alignment:
| Q |
10 |
cacacacgcacttcttcatgatgatcacacacatagtataacaaaattcattttcaaaataggttttcatctctagttttacaatagtatttaaatatca |
109 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
35494100 |
cacacacacatttcttcatgatgatcacacacatagtataacaaaaataattttcaaaataggttttcatctctacttttacaataatatttagatatca |
35494001 |
T |
|
| Q |
110 |
accgattcatttctttaatttccaccaataatcataatccctcttcccttaggtatcaaattcttcatggcccaatcacaatcaggacataccgcggctg |
209 |
Q |
| |
|
||| ||| |||| |||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35494000 |
accaattaatttgattaattaccaccaacaatcataatccctctttccttagttatcaaattcttcatggcccaatcacaatcaggacacaccgcggctg |
35493901 |
T |
|
| Q |
210 |
tggacgccatcttt |
223 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
35493900 |
tgaacgccgtcttt |
35493887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 35491863 - 35491785
Alignment:
| Q |
145 |
aatccctcttcccttaggtatcaaattcttcatggcccaatcacaatcaggacataccgcggctgtggacgccatcttt |
223 |
Q |
| |
|
||||||| |||| |||| ||||||||||||||||||||||| ||||||| |||| |||||| |||||||| |||||||| |
|
|
| T |
35491863 |
aatcccttttccattagttatcaaattcttcatggcccaattacaatcacgacacaccgcgactgtggacaccatcttt |
35491785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 35492186 - 35492134
Alignment:
| Q |
51 |
caaaattcattttcaaaataggttttcatctctagttttacaatagtatttaa |
103 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
35492186 |
caaaaatcatttttaaaataggttttcatctatacttttacaataatatttaa |
35492134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 35491956 - 35491892
Alignment:
| Q |
97 |
tatttaaatatcaaccgattcatttctttaatttccaccaataatcataatccctcttcccttag |
161 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| || |||| |||||||| ||||||||| |
|
|
| T |
35491956 |
tatttaaatatcaaccgattcatttgattaatgatcactaacaatcgtaatccctattcccttag |
35491892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University