View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8087_high_5 (Length: 580)

Name: NF8087_high_5
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8087_high_5
NF8087_high_5
[»] chr1 (2 HSPs)
chr1 (305-459)||(1165135-1165286)
chr1 (312-423)||(50982261-50982371)
[»] chr5 (3 HSPs)
chr5 (188-288)||(7219814-7219916)
chr5 (492-562)||(7219368-7219438)
chr5 (305-402)||(22842175-22842271)
[»] chr8 (3 HSPs)
chr8 (313-456)||(45147419-45147561)
chr8 (347-425)||(8234500-8234575)
chr8 (379-421)||(1574179-1574221)
[»] chr2 (1 HSPs)
chr2 (378-459)||(1531000-1531084)
[»] chr4 (2 HSPs)
chr4 (178-219)||(910568-910609)
chr4 (183-219)||(42813603-42813639)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 305 - 459
Target Start/End: Original strand, 1165135 - 1165286
Alignment:
Q  305 ggacacggatttggtgctgtaatttttccca--gttttagtcatggttgttggatgggtttatgtcacaagaagtctcacaattttgtaatccaatccaa 402  Q
    ||||| |||||||||||||||| ||| ||||  |||||| || ||| |||||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  1165135 ggacaaggatttggtgctgtaaatttccccacagttttattcttggctgttggatgggtatatgtcacaaga---ctcacaattttgtaatccaatccaa 1165231  T
Q  403 tggcctgaattaaaaactgtgtgtaactgtggaataattcaactgcagcaaatcctg 459  Q
    |||||| ||||||||||  ||||||||||||| |||||| |||||||||||||||||    
T  1165232 tggcctaaattaaaaac--tgtgtaactgtggcataatttaactgcagcaaatcctg 1165286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 50982261 - 50982371
Alignment:
Q  312 gatttggtgctgtaatttttccc--agttttagtcatggttgttggatgggtttatgtcacaagaagtctcacaattttgtaatccaatccaatggcctg 409  Q
    ||||||||||||||| ||||| |  ||||||| |   || |||||||||||||| ||| ||||||   || | |||||||||||||||| ||||||| |     
T  50982261 gatttggtgctgtaacttttcacgcagttttattttgggctgttggatgggtttgtgtgacaaga---cttataattttgtaatccaatacaatggctta 50982357  T
Q  410 aattaaaaactgtg 423  Q
    ||||||||||||||    
T  50982358 aattaaaaactgtg 50982371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 188 - 288
Target Start/End: Complemental strand, 7219916 - 7219814
Alignment:
Q  188 atatttgaacataatttgaatgattaatagatgcttaaaaa-ca-tggttaaattgtgctaaagtgatatttaatgagctgcaatactttgttattatat 285  Q
    |||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7219916 atattttaacataatttgaatgattaatagatgcttaaaaatcagtggttaaattgtgctaaagtgatatttaatgagctgcaacactttgttattatat 7219817  T
Q  286 tca 288  Q
    |||    
T  7219816 tca 7219814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 492 - 562
Target Start/End: Complemental strand, 7219438 - 7219368
Alignment:
Q  492 tgttaaccatctactagtttattgtcagaatttgaagttcaatttgtctcaaaataacacaactctaattc 562  Q
    |||||||||||||||||||| ||||  |||||| | || ||||||||||||||||||||||||||||||||    
T  7219438 tgttaaccatctactagtttgttgttggaatttcatgtccaatttgtctcaaaataacacaactctaattc 7219368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 305 - 402
Target Start/End: Original strand, 22842175 - 22842271
Alignment:
Q  305 ggacacggatttggtgctgtaatttttccca--gttttagtcatggttgttggatgggtttatgtcacaagaagtctcacaattttgtaatccaatccaa 402  Q
    ||||| |||||| ||||||||| || |||||  |||||| || ||| ||||||||| |||||||||||||||   ||| |||||||||||||||||||||    
T  22842175 ggacaaggatttcgtgctgtaaattctcccacagttttattcttggctgttggatgcgtttatgtcacaaga---ctcgcaattttgtaatccaatccaa 22842271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 313 - 456
Target Start/End: Original strand, 45147419 - 45147561
Alignment:
Q  313 atttggtgctgtaatttttcccag--ttttagtcatggttgttggatgggtttatgtcacaagaagtctcacaattttgtaatccaatccaatggcctga 410  Q
    |||||||||||||||||||||||   ||||| || ||  ||||||||| |||||||||| |||   | ||| ||||||||||| |||||||||| |||||    
T  45147419 atttggtgctgtaatttttcccacaattttattcttgactgttggatgagtttatgtcataag---tttcaaaattttgtaattcaatccaatgacctga 45147515  T
Q  411 attaaaaactgtgtgtaactgtggaataattcaactgcagcaaatc 456  Q
    |||||||| ||||||||||||||  |||||||||||| ||||||||    
T  45147516 attaaaaattgtgtgtaactgtgtgataattcaactggagcaaatc 45147561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 8234575 - 8234500
Alignment:
Q  347 ggttgttggatgggtttatgtcacaagaagtctcacaattttgtaatccaatccaatggcctgaattaaaaactgtgtg 425  Q
    ||||||||||||||||| ||| ||||||   || | ||||||||||||||||| |||||| | ||||||||||||||||    
T  8234575 ggttgttggatgggtttgtgtgacaaga---cttataattttgtaatccaatcaaatggcttaaattaaaaactgtgtg 8234500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 421
Target Start/End: Original strand, 1574179 - 1574221
Alignment:
Q  379 tcacaattttgtaatccaatccaatggcctgaattaaaaactg 421  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||    
T  1574179 tcacaattttgtaatccaattcaatgacctaaattaaaaactg 1574221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 459
Target Start/End: Original strand, 1531000 - 1531084
Alignment:
Q  378 ctcacaattttgtaatccaatccaatggcctgaattaaaaactgtgtgtaactgtg---gaataattcaactgcagcaaatcctg 459  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||    ||| |||||||||||||||||||||    
T  1531000 ctcaaaattttgtaatccaatccaatggtctgaattaaaaactgtgtgtaattatgagataattattcaactgcagcaaatcctg 1531084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 910568 - 910609
Alignment:
Q  178 aaaatcgtgtatatttgaacataatttgaatgattaatagat 219  Q
    |||||| ||||||||||||||||||||  |||||||||||||    
T  910568 aaaatcatgtatatttgaacataatttagatgattaatagat 910609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 42813639 - 42813603
Alignment:
Q  183 cgtgtatatttgaacataatttgaatgattaatagat 219  Q
    |||||||||||||||| |||||| |||||||||||||    
T  42813639 cgtgtatatttgaacacaatttgcatgattaatagat 42813603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University