View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_high_7 (Length: 565)
Name: NF8087_high_7
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 14 - 547
Target Start/End: Complemental strand, 37755402 - 37754867
Alignment:
| Q |
14 |
tttcgtgttcttgtgatgcattcaacttcctcaagacttgaagtggaaatgcgactgagatttttacttctttacttatgtgaagatcactgagaattga |
113 |
Q |
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| T |
37755402 |
tttcgtgttcttgtgatgcattcaacttccttaagacttgaagtggaaatgcgaccgagatttttacttctttacttatgtgaagatcactgagaattga |
37755303 |
T |
|
| Q |
114 |
atgaattgatttaagagcatgcataatcaaaggcatctcattttgtaataagcactcacttccacacctaacaatgatgcttttgatgtttaaatgtgga |
213 |
Q |
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| T |
37755302 |
atgaattgatttaagagcatgcataatcaaaggcagctcattttgtaataagcactcacttccacagctaacaatgatgcttttgatgtttaaatgtgga |
37755203 |
T |
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| Q |
214 |
agaaagttcactagttgagcttttagctcagaaactgctgaagggtttgaagtaatgaatttttcaacttggcttttgtttaagtagagatcaactaaca |
313 |
Q |
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| T |
37755202 |
agaaagttcactagttgagcttttagctcagaaactgctgaaggttttgaagtaatgaatttttcaacttggcttttgtttaagtagagatcaactaaca |
37755103 |
T |
|
| Q |
314 |
cttttgagttggtaagagtgctcaaaatccaatgatctgtgacgaaagctcgaatctgagacgaagaaactttgctatgctggaggaatgatgtcaatgt |
413 |
Q |
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| T |
37755102 |
gttttgagttggtaagagtgctcaaaatccaatgatctgtgacgaaagctcgaatctgagacgaagaaactttgctatgctggaggaatgatgtcaatgt |
37755003 |
T |
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| Q |
414 |
gtctcctctctcatgatatgaaaaacccaccaaagatcctgcatgagagtgaaataatatatgattagaatctgc--nnnnnnntgagtactatgtgtta |
511 |
Q |
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| T |
37755002 |
gtctcctctctcatgatatgaaaaacccaccaaagatcctgcatgagagtgaaataatatatgattagaatctgcaaaaaaaaatgagtactatgtgtta |
37754903 |
T |
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| Q |
512 |
ttatcatttatcagtgttaagtacttaccagaacat |
547 |
Q |
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| T |
37754902 |
ttatcatttatcagtgttaagtacttaccagaacat |
37754867 |
T |
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