View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_10 (Length: 501)
Name: NF8087_low_10
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 983261 - 982775
Alignment:
| Q |
1 |
gcaacataggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
983261 |
gcaacataggaaatttgaatgcatgaccaagacacaagatactttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgcca |
983162 |
T |
|
| Q |
101 |
cataaaatacctatatactttattttgtagcaaatgtttaaattgtactatattttttcttgtacaaacttgtactatataattaatttaccatagcagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
983161 |
cataaaatacctatatactttattttgtagcaaatgtttaaactgtactatattttttcttgtacaaacttgtactatattattaatttaccatagcagt |
983062 |
T |
|
| Q |
201 |
tcagttcacgcacgcataaactcattaatttaccataccaattcagttcacacatgtataaactcattaatgtacaatatagaacaatctcaatcagtga |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
983061 |
tcagttcatgcacgcataaactcattaatttaccataccaattcagttcacacatgtataaactcattaatgtacaatatagaacaatctcaatcagtga |
982962 |
T |
|
| Q |
301 |
acacaacatacaacattataacataatcacatggaggtcggttgagagacttgttgcatcgaacgatttttgaaagcttgactgagttaactctgggttg |
400 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |
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| T |
982961 |
acacaacatacaacattataacataatcacgtggaggtcggttgagagacttgttgcatcgaatgatttctgaaagcctgactgagttaactctgggttg |
982862 |
T |
|
| Q |
401 |
aagaattgtttgagagttgaagggtgaatcagtagacttgatctttttcttttaattatggtttgatttgattgataagagaataat |
487 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
982861 |
aagaattgtttgagagttgaagggtgaatcaatagacatgatctttttcttttaattatggtttgatttgattgataagagaataat |
982775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 40413326 - 40413224
Alignment:
| Q |
8 |
aggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccacataaaa |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||| || |
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| T |
40413326 |
aggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaataccctcgaaatatcttctaccatttacatcatcaactgtttgacatatacaa |
40413227 |
T |
|
| Q |
108 |
tac |
110 |
Q |
| |
|
||| |
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|
| T |
40413226 |
tac |
40413224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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