View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8087_low_11 (Length: 498)

Name: NF8087_low_11
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8087_low_11
NF8087_low_11
[»] chr1 (14 HSPs)
chr1 (136-486)||(8106018-8106360)
chr1 (18-136)||(8105792-8105910)
chr1 (334-402)||(33202898-33202967)
chr1 (334-397)||(19637768-19637832)
chr1 (334-397)||(7988446-7988510)
chr1 (331-394)||(10536527-10536591)
chr1 (334-404)||(29415741-29415811)
chr1 (342-396)||(42325561-42325616)
chr1 (340-390)||(18490457-18490507)
chr1 (340-396)||(6427351-6427408)
chr1 (340-397)||(44296496-44296553)
chr1 (322-397)||(11412751-11412827)
chr1 (334-389)||(13436466-13436522)
chr1 (341-396)||(37318414-37318469)
[»] chr7 (10 HSPs)
chr7 (347-405)||(38134414-38134473)
chr7 (334-405)||(4909143-4909215)
chr7 (340-397)||(2525845-2525903)
chr7 (333-386)||(10893863-10893917)
chr7 (347-396)||(12278836-12278886)
chr7 (341-390)||(36314629-36314679)
chr7 (339-391)||(21247736-21247789)
chr7 (343-398)||(8160415-8160471)
chr7 (340-395)||(31808510-31808566)
chr7 (374-406)||(31924417-31924449)
[»] scaffold0022 (1 HSPs)
scaffold0022 (340-405)||(99885-99951)
[»] chr5 (6 HSPs)
chr5 (340-397)||(28296328-28296386)
chr5 (341-405)||(38749565-38749630)
chr5 (364-406)||(36611450-36611492)
chr5 (349-397)||(2577190-2577239)
chr5 (341-397)||(15410450-15410507)
chr5 (346-398)||(19293430-19293483)
[»] chr3 (4 HSPs)
chr3 (334-391)||(20691325-20691383)
chr3 (335-392)||(40150567-40150625)
chr3 (341-405)||(13799496-13799561)
chr3 (341-405)||(21478675-21478740)
[»] chr4 (9 HSPs)
chr4 (347-397)||(18513249-18513300)
chr4 (340-390)||(17734979-17735029)
chr4 (347-405)||(5654599-5654658)
chr4 (347-397)||(14465302-14465353)
chr4 (335-397)||(56049877-56049939)
chr4 (340-405)||(40783949-40784015)
chr4 (345-397)||(20743284-20743337)
chr4 (333-389)||(33950144-33950201)
chr4 (334-398)||(44362665-44362730)
[»] chr2 (9 HSPs)
chr2 (340-394)||(31026698-31026753)
chr2 (347-396)||(18570973-18571023)
chr2 (347-398)||(4229416-4229468)
chr2 (347-397)||(10535767-10535818)
chr2 (362-396)||(16630796-16630830)
chr2 (333-397)||(30298443-30298506)
chr2 (340-385)||(24980537-24980582)
chr2 (347-397)||(37402092-37402144)
chr2 (340-399)||(45000847-45000906)
[»] chr8 (6 HSPs)
chr8 (339-396)||(33382019-33382077)
chr8 (342-391)||(3508058-3508108)
chr8 (341-398)||(11803258-11803316)
chr8 (345-397)||(9936814-9936867)
chr8 (341-405)||(12570736-12570801)
chr8 (334-397)||(12985392-12985456)
[»] scaffold0011 (1 HSPs)
scaffold0011 (339-405)||(240021-240088)
[»] chr6 (6 HSPs)
chr6 (340-398)||(32511667-32511726)
chr6 (340-400)||(14721238-14721299)
chr6 (337-397)||(18612621-18612682)
chr6 (334-397)||(9658879-9658943)
chr6 (334-397)||(32728367-32728431)
chr6 (347-398)||(34446564-34446616)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 136 - 486
Target Start/End: Original strand, 8106018 - 8106360
Alignment:
Q  136 atgtaatcaactacttcacctaaactaaccaaagggaaccatttgtcaatactgtatcatctgttttgatatctttaaacattctacaaaatgtccagtt 235  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8106018 atgtaatcaactacttcaccaaaactaaccaaagggaaccatatgtcaatactgtatcatctgttttgatatctttaaacattctacaaaatgtccagta 8106117  T
Q  236 taactgtgcttttttctcttataactattgcaatgttaagtgatccgtgcatagggtctttattgtagtagacgtgttccggtattggacacatttcggt 335  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8106118 taactgtgtttttttctcttataactattgcaatgttaggttatccgtgcatagggtctttattgtagtagacgtgttccgttattggacacatttcggt 8106217  T
Q  336 gtctgacaccaacacatatgattacatgaattatgtctttttcttaaattattatcggtgtcaacatgtcatagtccatgtctctgtatttagtactctc 435  Q
    |||||||||||||||||         | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8106218 gtctgacaccaacacat--------gtaaattatgtctttttcttaaattattatcggtatcaacatgtcatagtccatgtctctgtatttagtactctc 8106309  T
Q  436 taacttgaggggggctataattagttcataaattagttagttagttgatgt 486  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8106310 taatttgaggggggctataattagttcataaattagttagttagttgatgt 8106360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 8105792 - 8105910
Alignment:
Q  18 ttctgcctcaaggatcatgcttttctagttccataatcttctcttctcatggcatcctaatatttcctatatcacaatattacttgatgtgggactattt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  8105792 ttctgcctcaaggatcatgcttttctagttccataatcttctcttctcatagcatcctaatatttcctatatcacaatattactccatgtgcgactattt 8105891  T
Q  118 tatattataacgtgacaca 136  Q
    ||||||||||||| |||||    
T  8105892 tatattataacgtcacaca 8105910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 402
Target Start/End: Complemental strand, 33202967 - 33202898
Alignment:
Q  334 gtgtctgacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtcaacat 402  Q
    |||||||||||||| |||||||||||||| || ||||||| |||| | ||||||||||||||||||||||    
T  33202967 gtgtctgacaccaaaacatatgattacattgatttatgtcattttttaaaattattatcggtgtcaacat 33202898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 19637832 - 19637768
Alignment:
Q  334 gtgtctgacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 397  Q
    ||||| |||||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  19637832 gtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgtc 19637768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 7988446 - 7988510
Alignment:
Q  334 gtgtctgacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 397  Q
    ||||| ||||||||||| ||||||||||| ||||||||||  ||||||||||||||||| |||||    
T  7988446 gtgtccgacaccaacacttatgattacattgaattatgtcactttcttaaattattatcagtgtc 7988510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 394
Target Start/End: Original strand, 10536527 - 10536591
Alignment:
Q  331 tcggtgtctgacaccaacacatatgattac-atgaattatgtctttttcttaaattattatcggt 394  Q
    ||||||||||||||| |||||||||||| |  |||| ||||| || |||||||||||||||||||    
T  10536527 tcggtgtctgacaccgacacatatgattgcgttgaactatgttttgttcttaaattattatcggt 10536591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 29415811 - 29415741
Alignment:
Q  334 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgt 404  Q
    ||||||||||| ||||||| ||||||   ||||||||||| |||||||||||||||||| || |||||||||    
T  29415811 gtgtctgacac-aacacatgtgattatgctgaattatgtcattttcttaaattattatcagtttcaacatgt 29415741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 42325616 - 42325561
Alignment:
Q  342 caccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgt 396  Q
    |||||||||||||  ||||| ||||||||||| |||||| ||||||||||||||||    
T  42325616 caccaacacatattgttacactgaattatgtcattttctcaaattattatcggtgt 42325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 18490507 - 18490457
Alignment:
Q  340 gacaccaacacatatgattacatgaattatgtctttttcttaaattattat 390  Q
    |||||||| |||||||||||||||||||||||| |||| | ||||| ||||    
T  18490507 gacaccaagacatatgattacatgaattatgtcattttttaaaattgttat 18490457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 6427408 - 6427351
Alignment:
Q  340 gacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgt 396  Q
    ||||||||||||||| |||||| ||||||||||  |||||| ||||||||| ||||||    
T  6427408 gacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 44296496 - 44296553
Alignment:
Q  340 gacaccaacacatatgattacatgaattatgtctttttcttaaattattatcggtgtc 397  Q
    |||||| |||||||||||||  | ||||||||| |||||| ||||||||| |||||||    
T  44296496 gacaccgacacatatgattaactaaattatgtcattttctcaaattattaccggtgtc 44296553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 397
Target Start/End: Original strand, 11412751 - 11412827
Alignment:
Q  322 ggacacatttcggtgtctgacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 397  Q
    |||||||| | ||||||  ||||| |||| |||||| |||| |||||||||| |||||| | |||||||||||||||    
T  11412751 ggacacatgttggtgtccaacaccgacacctatgatcacattgaattatgtcattttctcatattattatcggtgtc 11412827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 13436522 - 13436466
Alignment:
Q  334 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattatta 389  Q
    ||||| ||||||||||||||| |||||| ||||||||||  ||| ||||||||||||    
T  13436522 gtgtccgacaccaacacatataattacactgaattatgtgatttccttaaattatta 13436466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 396
Target Start/End: Complemental strand, 37318469 - 37318414
Alignment:
Q  341 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgt 396  Q
    ||||||||||||||||||||| ||||||| ||| |||| ||||||||||||| ||||    
T  37318469 acaccaacacatatgattacattgaattacgtcctttt-ttaaattattatcagtgt 37318414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 347 - 405
Target Start/End: Original strand, 38134414 - 38134473
Alignment:
Q  347 acacatatgattacat-gaattatgtctttttcttaaattattatcggtgtcaacatgtc 405  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  38134414 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtc 38134473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 4909215 - 4909143
Alignment:
Q  334 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgtc 405  Q
    ||||| |||||  ||||||||||||||| ||||||||||  |||||| |||||||||| ||||||||| ||||    
T  4909215 gtgtccgacactgacacatatgattacaatgaattatgtaattttctcaaattattattggtgtcaacctgtc 4909143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 2525845 - 2525903
Alignment:
Q  340 gacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 397  Q
    |||||| ||||||||||||| || |||||||||| ||| || |||||||||||||||||    
T  2525845 gacaccgacacatatgattatattgaattatgtcatttgctcaaattattatcggtgtc 2525903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 10893863 - 10893917
Alignment:
Q  333 ggtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaatta 386  Q
    |||||| ||||||||||||| |||||||| | ||||||||| |||||||||||||    
T  10893863 ggtgtcagacaccaacacatgtgattacattcaattatgtcattttcttaaatta 10893917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 12278886 - 12278836
Alignment:
Q  347 acacatatgattaca-tgaattatgtctttttcttaaattattatcggtgt 396  Q
    |||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  12278886 acacatataattacactgaattatgtcattttcttaaattattatcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 36314629 - 36314679
Alignment:
Q  341 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattat 390  Q
    ||||||||||||||||||||| |||| |||||| |||||| ||||||||||    
T  36314629 acaccaacacatatgattacattgaaatatgtcattttctcaaattattat 36314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 21247736 - 21247789
Alignment:
Q  339 tgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatc 391  Q
    ||||||||||||| ||||||||| ||||||| ||| |||||| |||||||||||    
T  21247736 tgacaccaacacacatgattacattgaattacgtcattttctcaaattattatc 21247789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 8160471 - 8160415
Alignment:
Q  343 accaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 398  Q
    |||||||||||| |||||| | ||||||||  |||||||||||||||| ||||||||    
T  8160471 accaacacatataattacactaaattatgtaattttcttaaattattagcggtgtca 8160415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 31808510 - 31808566
Alignment:
Q  340 gacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtg 395  Q
    ||||||||||||| |||||||| ||| || |||| |||||| |||||||||||||||    
T  31808510 gacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtg 31808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 31924449 - 31924417
Alignment:
Q  374 ttttcttaaattattatcggtgtcaacatgtca 406  Q
    ||||||||||||||||||||||||||| |||||    
T  31924449 ttttcttaaattattatcggtgtcaacgtgtca 31924417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 99951 - 99885
Alignment:
Q  340 gacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtcaacatgtc 405  Q
    ||||||||||||||| ||||||| |||||||||  |||||| ||||||||||||||||| |||||||    
T  99951 gacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgacatgtc 99885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 28296386 - 28296328
Alignment:
Q  340 gacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 397  Q
    ||||||||||||||||| ||||| |||||||||| |||||| |||||||||||||||||    
T  28296386 gacaccaacacatatgagtacattgaattatgtcattttctcaaattattatcggtgtc 28296328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 38749565 - 38749630
Alignment:
Q  341 acaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtcaacatgtc 405  Q
    |||||||||||||| ||||||| |||||||||| |||| | ||||||||||||||||| |||||||    
T  38749565 acaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgacatgtc 38749630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 36611492 - 36611450
Alignment:
Q  364 aattatgtctttttcttaaattattatcggtgtcaacatgtca 406  Q
    ||||||||| |||||||||| || |||||||||||||||||||    
T  36611492 aattatgtcattttcttaaactactatcggtgtcaacatgtca 36611450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 2577190 - 2577239
Alignment:
Q  349 acatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 397  Q
    ||||||||||||| | ||||||||| |||||| |||||||||||||||||    
T  2577190 acatatgattacactaaattatgtcattttctcaaattattatcggtgtc 2577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 15410450 - 15410507
Alignment:
Q  341 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 397  Q
    ||||||||||||||||||||| ||||| || |  |||||||||||||||| |||||||    
T  15410450 acaccaacacatatgattacactgaatcatataattttcttaaattattagcggtgtc 15410507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 19293430 - 19293483
Alignment:
Q  346 aacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 398  Q
    |||||||||||||||| | ||||||||  ||||||||||||||||| |||||||    
T  19293430 aacacatatgattacacttaattatgttattttcttaaattattattggtgtca 19293483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 20691383 - 20691325
Alignment:
Q  334 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatc 391  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 40150567 - 40150625
Alignment:
Q  335 tgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcg 392  Q
    |||| |||||| ||||||||||||||| |||||||| || |||||| ||||||||||||    
T  40150567 tgtcagacaccgacacatatgattacattgaattatatcattttctcaaattattatcg 40150625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 405
Target Start/End: Complemental strand, 13799561 - 13799496
Alignment:
Q  341 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgtc 405  Q
    ||||| |||||||| |||||| | ||||||||| |||||| ||| |||||||||||||||| ||||    
T  13799561 acaccgacacatattattacacttaattatgtcattttctcaaactattatcggtgtcaacgtgtc 13799496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 405
Target Start/End: Complemental strand, 21478740 - 21478675
Alignment:
Q  341 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgtc 405  Q
    ||||||||||||||||||||| ||| ||||||| | || | |||||||||| |||||| |||||||    
T  21478740 acaccaacacatatgattacattgatttatgtcatcttgtgaaattattattggtgtcgacatgtc 21478675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 18513249 - 18513300
Alignment:
Q  347 acacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 397  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  18513249 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 17735029 - 17734979
Alignment:
Q  340 gacaccaacacatatgattacatgaattatgtctttttcttaaattattat 390  Q
    |||||| |||||||||||||||||||||||||| |||| ||||||| ||||    
T  17735029 gacaccgacacatatgattacatgaattatgtcatttttttaaattgttat 17734979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 405
Target Start/End: Original strand, 5654599 - 5654658
Alignment:
Q  347 acacatatgattacat-gaattatgtctttttcttaaattattatcggtgtcaacatgtc 405  Q
    |||| ||||||||||| |||||||||| |||||| ||||||||||| ||||| |||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattatcagtgtcgacatgtc 5654658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 14465302 - 14465353
Alignment:
Q  347 acacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 397  Q
    ||||||||||||| || |||||||||| |||||| |||||||||||||||||    
T  14465302 acacatatgattaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 56049939 - 56049877
Alignment:
Q  335 tgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 397  Q
    ||||||||||| ||||||||||||||| |||| ||||||  ||||| |||||||||||||||||    
T  56049939 tgtctgacaccgacacatatgattacattgaactatgtc-atttctcaaattattatcggtgtc 56049877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 40784015 - 40783949
Alignment:
Q  340 gacaccaacacatatgattac-atgaattatgtctttttcttaaattattatcggtgtcaacatgtc 405  Q
    |||||||||||||||||||||  ||||||||||  || ||| ||||||||||||| ||| |||||||    
T  40784015 gacaccaacacatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacatgtc 40783949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 20743284 - 20743337
Alignment:
Q  345 caacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 397  Q
    |||||| |||||||||| ||||||||||| |||||| ||||||||||| |||||    
T  20743284 caacacctatgattacactgaattatgtcattttctcaaattattatccgtgtc 20743337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 33950201 - 33950144
Alignment:
Q  333 ggtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattatta 389  Q
    ||||||||||||| ||||||||||||||| | ||||||||  |||||| |||||||||    
T  33950201 ggtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 398
Target Start/End: Complemental strand, 44362730 - 44362665
Alignment:
Q  334 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 398  Q
    ||||||||||||||||| | |||||||| | ||||||||| |||||| ||| | ||||||||||||    
T  44362730 gtgtctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgtca 44362665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 31026753 - 31026698
Alignment:
Q  340 gacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggt 394  Q
    |||||| ||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  31026753 gacaccgacatatatgattacattgaattatgtcattttcttaaattattatcggt 31026698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 18571023 - 18570973
Alignment:
Q  347 acacatatgattacat-gaattatgtctttttcttaaattattatcggtgt 396  Q
    |||||||||||||||| |||||||||| |||||| ||||||||||||||||    
T  18571023 acacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 398
Target Start/End: Original strand, 4229416 - 4229468
Alignment:
Q  347 acacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 398  Q
    ||||||||||||||| ||||||||||| || |||||||||||||| |||||||    
T  4229416 acacatatgattacactgaattatgtcattctcttaaattattattggtgtca 4229468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 10535767 - 10535818
Alignment:
Q  347 acacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 397  Q
    |||| |||||||||| ||||||||||| |||||| |||||||||||||||||    
T  10535767 acacttatgattacactgaattatgtcattttctcaaattattatcggtgtc 10535818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 396
Target Start/End: Complemental strand, 16630830 - 16630796
Alignment:
Q  362 tgaattatgtctttttcttaaattattatcggtgt 396  Q
    ||||||||||| |||||||||||||||||||||||    
T  16630830 tgaattatgtcattttcttaaattattatcggtgt 16630796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 30298443 - 30298506
Alignment:
Q  333 ggtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 397  Q
    |||||| |||||| ||||||  ||||||| ||||||||||| |||| |||||||||||||||||||    
T  30298443 ggtgtccgacaccgacacat--gattacactgaattatgtcattttattaaattattatcggtgtc 30298506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 385
Target Start/End: Complemental strand, 24980582 - 24980537
Alignment:
Q  340 gacaccaacacatatgattacatgaattatgtctttttcttaaatt 385  Q
    ||||||||||| ||||||||||||||||||  | ||||||||||||    
T  24980582 gacaccaacacctatgattacatgaattataacattttcttaaatt 24980537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 37402092 - 37402144
Alignment:
Q  347 acacatatgattaca-tgaattatgtc-tttttcttaaattattatcggtgtc 397  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||    
T  37402092 acacatatgattacattgaattatgtcattttttttaaattataatcggtgtc 37402144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 45000847 - 45000906
Alignment:
Q  340 gacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaa 399  Q
    |||||| ||||||||||||||| |||||| |||| |||||| ||||| |||||||||||||    
T  45000847 gacaccgacacatatgattacattgaattgtgtcattttctcaaatt-ttatcggtgtcaa 45000906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 33382019 - 33382077
Alignment:
Q  339 tgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgt 396  Q
    ||||||| |||||||| |||||  ||||||||||| |||||||||||||||||||||||    
T  33382019 tgacaccgacacatataattactctgaattatgtcattttcttaaattattatcggtgt 33382077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 3508108 - 3508058
Alignment:
Q  342 caccaacacatatgattaca-tgaattatgtctttttcttaaattattatc 391  Q
    |||||||||||||||||||| ||||||||||  |||||| |||||||||||    
T  3508108 caccaacacatatgattacattgaattatgttattttctcaaattattatc 3508058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 11803316 - 11803258
Alignment:
Q  341 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 398  Q
    |||||||||||||| |||||| ||||||||||  |||||||||||||||| | ||||||    
T  11803316 acaccaacacatataattacactgaattatgtgattttcttaaattattaacagtgtca 11803258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 9936867 - 9936814
Alignment:
Q  345 caacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 397  Q
    ||||||||||||||| || ||||||| || ||||||||||||||||||| ||||    
T  9936867 caacacatatgattatattgaattatatcattttcttaaattattatcgatgtc 9936814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 12570736 - 12570801
Alignment:
Q  341 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgtc 405  Q
    ||||||||| |||| |||||| | |||||||  ||||||||||||||||| |||||||||| ||||    
T  12570736 acaccaacatatataattacacttaattatgcgtttttcttaaattattagcggtgtcaacgtgtc 12570801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 12985456 - 12985392
Alignment:
Q  334 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 397  Q
    ||||| |||||| ||| ||||||||||| ||||||||||  |||||| |||||||||| ||||||    
T  12985456 gtgtccgacaccgacatatatgattacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 405
Target Start/End: Original strand, 240021 - 240088
Alignment:
Q  339 tgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgtc 405  Q
    ||||||| ||||||||||||||| |||||||| |  |||||| |||||||||| | ||||||||||||    
T  240021 tgacaccgacacatatgattacattgaattatattattttctcaaattattatagttgtcaacatgtc 240088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 32511667 - 32511726
Alignment:
Q  340 gacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 398  Q
    ||||||||||| ||| |||||| ||||||||||  |||||||||||||||| ||||||||    
T  32511667 gacaccaacacttataattacactgaattatgtgattttcttaaattattagcggtgtca 32511726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 14721299 - 14721238
Alignment:
Q  340 gacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaac 400  Q
    ||||||||||||||| |||| | ||||||||||  ||||||||||||||||  |||||||||    
T  14721299 gacaccaacacatataattatagtgaattatgtaattttcttaaattattaatggtgtcaac 14721238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 18612682 - 18612621
Alignment:
Q  337 tctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 397  Q
    ||||||||||||||||||||||||| ||||||||| | |||||   ||||||||||| ||||    
T  18612682 tctgacaccaacacatatgattacattgaattatgacattttcaagaattattatcgatgtc 18612621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 9658943 - 9658879
Alignment:
Q  334 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 397  Q
    |||||| ||||| ||| |||| |||||| ||||||||||  |||||||||||||||| |||||||    
T  9658943 gtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtc 9658879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 32728431 - 32728367
Alignment:
Q  334 gtgtctgacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 397  Q
    |||||||||  |||||||| |  |||||| |||||||||| ||||||||| ||||||||||||||    
T  32728431 gtgtctgacgtcaacacatgtatttacatagaattatgtcattttcttaatttattatcggtgtc 32728367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 398
Target Start/End: Complemental strand, 34446616 - 34446564
Alignment:
Q  347 acacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 398  Q
    |||| |||||||||| ||||||||||| |||||| ||||||||||| ||||||    
T  34446616 acacctatgattacactgaattatgtcattttctcaaattattatccgtgtca 34446564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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