View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8087_low_13 (Length: 467)

Name: NF8087_low_13
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8087_low_13
NF8087_low_13
[»] chr7 (2 HSPs)
chr7 (49-233)||(40323342-40323526)
chr7 (1-39)||(40323547-40323585)
[»] chr8 (4 HSPs)
chr8 (252-359)||(1236370-1236476)
chr8 (383-431)||(2643774-2643822)
chr8 (189-267)||(1237016-1237095)
chr8 (304-365)||(4098873-4098934)
[»] chr6 (2 HSPs)
chr6 (378-448)||(7886616-7886686)
chr6 (394-442)||(7875544-7875592)
[»] chr2 (1 HSPs)
chr2 (247-375)||(38088898-38089025)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 49 - 233
Target Start/End: Complemental strand, 40323526 - 40323342
Alignment:
Q  49 ggaagaatatgaagattaaaaggctgtaagattggaaccaccacctgaccatatttttcattttcaaaatttagcagtatgtttttacctttattgaaaa 148  Q
    |||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||||||| |||||||| | ||||||||||||||    
T  40323526 ggaagaatataaagattaaaaggctgtaagattggaaacaccgcttgaccatatttttcatttccaaaatttagtagtatgttgtcacctttattgaaaa 40323427  T
Q  149 tagcataattaaatgcaatacaaagtatctcaattctcaagtattacatttttgatgcagctcataaaatgaggacggtgcacca 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40323426 tagcataattaaatgcaatacaaagtatctcaattctcaagtattacatttttgatgcagttcataaaatgaggacggtgcacca 40323342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40323585 - 40323547
Alignment:
Q  1 agtgtcatgactaaaggaaactcgttttatgagggaaac 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40323585 agtgtcatgactaaaggaaactcgttttatgagggaaac 40323547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 252 - 359
Target Start/End: Complemental strand, 1236476 - 1236370
Alignment:
Q  252 aaattggcaaagactttggagggaaatattttagggttaacaattttggtaattaatgcattacaattagagggaaatttttaggtttagatgttgcttg 351  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||||| |||| |||||||||||||||||||||||||||||||||     
T  1236476 aaattgccaaagactttggagggaaatgttttagggttaacaatttag-taatttatgcagtacagttagagggaaatttttaggtttagatgttgcttt 1236378  T
Q  352 acctaata 359  Q
    ||||||||    
T  1236377 acctaata 1236370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 2643822 - 2643774
Alignment:
Q  383 ggagatgttcaacagtcacaaacacatttctgatttttgcaagaaccac 431  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  2643822 ggagatgttcaacaagcacaaacacatttcagatttttgcaagaaccac 2643774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 1237095 - 1237016
Alignment:
Q  189 gtattacatttttgatgcagctcataaaatgaggacggtgcacca--nnnnnnnnattggaattcaaattggcaaagactt 267  Q
    |||||||||||| |||| ||| |||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  1237095 gtattacattttcgatg-agcgcataaaatgaggacggtgcaccattttttttttattggaattcaaattggcaaagactt 1237016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 4098934 - 4098873
Alignment:
Q  304 ttaatgcattacaattagagggaaatttttaggtttagatgttgcttgacctaataagcttt 365  Q
    ||||||||  |||||||||||||||  | ||||||||| |||||  ||||||||||||||||    
T  4098934 ttaatgcagcacaattagagggaaaaatctaggtttaggtgttgtatgacctaataagcttt 4098873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 378 - 448
Target Start/End: Complemental strand, 7886686 - 7886616
Alignment:
Q  378 atgtaggagatgttcaacagtcacaaacacatttctgatttttgcaagaaccaccattccagcctcctact 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7886686 atgtaggagatgttcaacagtcacaaacacatttctgatttttgcaagaaccaccataccagcctcctact 7886616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 7875592 - 7875544
Alignment:
Q  394 acagtcacaaacacatttctgatttttgcaagaaccaccattccagcct 442  Q
    ||||||||||||||||||||| ||||||||| |||| ||  ||||||||    
T  7875592 acagtcacaaacacatttctgctttttgcaataacctcctctccagcct 7875544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 375
Target Start/End: Original strand, 38088898 - 38089025
Alignment:
Q  247 aattcaaattggcaaagactttggagggaaatattttagggttaacaattttggtaattaatgcattacaattagagggaaatttttaggtttagatgtt 346  Q
    |||||||||||||||  | || ||||||||| || ||||||||||||   || | | ||||||||  ||||||||||| ||||| |||||||||| ||||    
T  38088898 aattcaaattggcaagaatttgggagggaaacatattagggttaacatgcttaggagttaatgcaacacaattagaggaaaattattaggtttaggtgtt 38088997  T
Q  347 gcttgacctaataagcttttaaggataag 375  Q
    |||| ||||||||| |||||||| |||||    
T  38088998 gcttaacctaataa-cttttaagaataag 38089025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University