View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_14 (Length: 462)
Name: NF8087_low_14
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_14 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: scaffold0071 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 4539 - 4973
Alignment:
| Q |
18 |
atatcgagctccacccacaaactttgatggcaacacaatccgcttcccagctgaagatgaagatgtctcacctctgagtactgcctcggccaaccctcta |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4539 |
atatcgagctccacccacaaactttgatggcaacacaatccgcttcccagctgaagatgaagatgtctcacctctgagtactgccttggccaaccctcta |
4638 |
T |
|
| Q |
118 |
tacatataatctctaacttctttttggtggtctctataccattttaaacgccatgactctatcatactatcagcatcaaccaagaattattgaaacaacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4639 |
tacatataatctctaacttctttttggtggtctctataccattttaaacgtcgtgactctatcatactatcagcatcaaccaagaattattgaaacaacc |
4738 |
T |
|
| Q |
218 |
gtctagaatacaacaaagcagccggatcttgtaatactctctgttggatagtgtaagcaaaccattctttcatggaaacaaacaatctttttattgaagt |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4739 |
gtctagaatacaacagagcagccggatcttgtaatactctctgttggatagtgtaagcaaaccattctttcatggaaacaaacaatctttttattgaagt |
4838 |
T |
|
| Q |
318 |
gttggttggcctattggtaaatcgaatatcacgtcgaaatccattttctcctcttgtgaagatcaaggggtattgcagcggtaagtaagatggttcaaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4839 |
gttggttggcctattggtaaatcgaatatcacgtcgaaatccattttctcctcttgtgaagatcaaggggtattgcagcggtaagtaagatggttcaaac |
4938 |
T |
|
| Q |
418 |
acggagatacgctttagtaatccagaccgttcttc |
452 |
Q |
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| T |
4939 |
acggagatacgctttagtaatccagaccgttcttc |
4973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 15457652 - 15457218
Alignment:
| Q |
18 |
atatcgagctccacccacaaactttgatggcaacacaatccgcttcccagctgaagatgaagatgtctcacctctgagtactgcctcggccaaccctcta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15457652 |
atatcgagctccacccacaaactttgatggcaacacaatccgcttcccagctgaagatgaagatgtctcacctctgagtactgccttggccaaccctcta |
15457553 |
T |
|
| Q |
118 |
tacatataatctctaacttctttttggtggtctctataccattttaaacgccatgactctatcatactatcagcatcaaccaagaattattgaaacaacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15457552 |
tacatataatctctaacttctttttggtggtctctataccattttaaacgtcgtgactctatcatactatcagcatcaaccaagaattattgaaacaacc |
15457453 |
T |
|
| Q |
218 |
gtctagaatacaacaaagcagccggatcttgtaatactctctgttggatagtgtaagcaaaccattctttcatggaaacaaacaatctttttattgaagt |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15457452 |
gtctagaatacaacagagcagccggatcttgtaatactctctgttggatagtgtaagcaaaccattctttcatggaaacaaacaatctttttattgaagt |
15457353 |
T |
|
| Q |
318 |
gttggttggcctattggtaaatcgaatatcacgtcgaaatccattttctcctcttgtgaagatcaaggggtattgcagcggtaagtaagatggttcaaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15457352 |
gttggttggcctattggtaaatcgaatatcacgtcgaaatccattttctcctcttgtgaagatcaaggggtattgcagcggtaagtaagatggttcaaac |
15457253 |
T |
|
| Q |
418 |
acggagatacgctttagtaatccagaccgttcttc |
452 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
15457252 |
acggagatacgctttagtaatccagaccgttcttc |
15457218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 922409 - 922345
Alignment:
| Q |
118 |
tacatataatctctaacttctttttggtggtctctataccattttaaacgccatgactctatcat |
182 |
Q |
| |
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||||||| | |||| || ||||| ||||||||||| |||||||| |||||||||||||| ||||| |
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| T |
922409 |
tacatatcagctctgacctctttctggtggtctctgtaccatttcaaacgccatgactcaatcat |
922345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 18989825 - 18989879
Alignment:
| Q |
133 |
acttctttttggtggtctctataccattttaaacgccatgactctatcatactat |
187 |
Q |
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|||||||| || || ||||| ||||| ||||| |||||||||||||||||||||| |
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| T |
18989825 |
acttctttctgatgatctctgtaccactttaatcgccatgactctatcatactat |
18989879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 15498317 - 15498430
Alignment:
| Q |
116 |
tatacatataatctctaacttctttttggtggtctctataccattttaaacgccatgactctatcatactatcagcatcaaccaagaattattgaaacaa |
215 |
Q |
| |
|
||||||||| | |||| |||||||||||||| ||||||||||| || | |||| ||||||||||| || | ||| |||||||| || | ||||||||| |
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| T |
15498317 |
tatacatatcagctcttacttctttttggtgatctctataccacttcagctgccaagactctatcatgctgtaagcgtcaaccaaaaactgttgaaacaa |
15498416 |
T |
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| Q |
216 |
ccgtctagaataca |
229 |
Q |
| |
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||| || ||||||| |
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| T |
15498417 |
ccgcctggaataca |
15498430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 18007030 - 18007114
Alignment:
| Q |
116 |
tatacatataatctctaacttctttttggtggtctctataccattttaaacgccatgactctatcatactatcagcatcaaccaa |
200 |
Q |
| |
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||||||||| | | |||||||| |||||||| ||||||||||| || || | ||| |||||||||||||| | ||||||||||| |
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| T |
18007030 |
tatacatatcagccctaacttcattttggtgatctctataccacttcaatcaccaagactctatcatactgtatgcatcaaccaa |
18007114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 30064792 - 30064738
Alignment:
| Q |
133 |
acttctttttggtggtctctataccattttaaacgccatgactctatcatactat |
187 |
Q |
| |
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|||||||| || || ||||| ||||| ||||| |||||||||||||||||||||| |
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|
| T |
30064792 |
acttctttctgatgatctctgtaccactttaatcgccatgactctatcatactat |
30064738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 45134464 - 45134410
Alignment:
| Q |
133 |
acttctttttggtggtctctataccattttaaacgccatgactctatcatactat |
187 |
Q |
| |
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|||||||| || || ||||| ||||| ||||| |||||||||||||||||||||| |
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|
| T |
45134464 |
acttctttctgatgatctctgtaccactttaatcgccatgactctatcatactat |
45134410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 47738604 - 47738520
Alignment:
| Q |
116 |
tatacatataatctctaacttctttttggtggtctctataccattttaaacgccatgactctatcatactatcagcatcaaccaa |
200 |
Q |
| |
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||||||||| | | |||||||| |||||||| ||||||||||| || || ||||| |||||||||||||| | ||||||||||| |
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| T |
47738604 |
tatacatatcagccctaacttccttttggtgatctctataccacttcaatcgccaagactctatcatactgtatgcatcaaccaa |
47738520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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