View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_17 (Length: 422)
Name: NF8087_low_17
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 407
Target Start/End: Original strand, 30932603 - 30932996
Alignment:
| Q |
14 |
atagacatcacttttgtcactgacccttccagttttgtagtaatctggatcaatgtaagcatgagttcctaccagaaaagttgaaacatgggtaacattg |
113 |
Q |
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| T |
30932603 |
atagacatcacttttctcactgacccttccagtttcatagtaatctggatcaatgtaagcacgagttcccaccggaagagttgaaacatgagtcacatag |
30932702 |
T |
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| Q |
114 |
tctggaagtaaacgtgagagtccaaaatctgcaactttaacagaaattttttcatccagcagaatattacttccttttatgtcacgatggatgatacctg |
213 |
Q |
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| T |
30932703 |
tcaggaagaaaccgcgagagaccaaaatctgcaactttaactgcaaaattttcatccagcagaatattgcttccttttatgtcacgatggatgatacctg |
30932802 |
T |
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| Q |
214 |
agttatggagaaataccaaggcgttcgcaggttcaatggcaatattcaatctagtaagccatgatagtttattacatgaagatccgtgaagatgttgtgt |
313 |
Q |
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| T |
30932803 |
aatcgtgaagaaataccaaggcgttcgcagtttcaatggcaatattcaatctagtaagccatgatagtttattacatgaagattcgtgaagatgttgtgt |
30932902 |
T |
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| Q |
314 |
aagagttccattagagatgtactcgtacacaggcatgtgcttgttgctatgacgagaactgcaaccataaagtgaaaccagattttgatgatgc |
407 |
Q |
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| T |
30932903 |
aagagttccattagagatgtactcgtacacaagcatgtacttgttgctatgacgagaactgcaaccataaagtgaaaccagattttgatgatgc |
30932996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 407
Target Start/End: Original strand, 30962947 - 30963340
Alignment:
| Q |
14 |
atagacatcacttttgtcactgacccttccagttttgtagtaatctggatcaatgtaagcatgagttcctaccagaaaagttgaaacatgggtaacattg |
113 |
Q |
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| T |
30962947 |
atagacatcgcttttctcacttacccttccagtgtcatagtaatctggatcaatgtaagcacgagttcctaccggaagagttgaaacatgagtcacatag |
30963046 |
T |
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| Q |
114 |
tctggaagtaaacgtgagagtccaaaatctgcaactttaacagaaattttttcatccagcagaatattacttccttttatgtcacgatggatgatacctg |
213 |
Q |
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| T |
30963047 |
tcaggaagaaaccgcgagagaccaaaatctgcaactttaacagcaaaactttcatccagcagaatattgcttccttttatgtcacgatggatgatacctg |
30963146 |
T |
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| Q |
214 |
agttatggagaaataccaaggcgttcgcaggttcaatggcaatattcaatctagtaagccatgatagtttattacatgaagatccgtgaagatgttgtgt |
313 |
Q |
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| T |
30963147 |
agtcgtgaagaaataccaaggcattcgcagtttcaatggcaatattcaatctagtaagccatgatagtttactaaatgaagatccgtgaagatgttgtgt |
30963246 |
T |
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| Q |
314 |
aagagttccattagagatgtactcgtacacaggcatgtgcttgttgctatgacgagaactgcaaccataaagtgaaaccagattttgatgatgc |
407 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30963247 |
aagagttccattagagatgtactcgtacacaagcatgtgcttgttgctatgacgagaactgcaaccataaagtgaaaccagattttgatgatgc |
30963340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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