View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_18 (Length: 402)
Name: NF8087_low_18
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 2 - 362
Target Start/End: Original strand, 15412689 - 15413051
Alignment:
| Q |
2 |
caaacacgtcatacatctgatccacgttattatgtatatattagcggagaaattaacaccccgtctgacttgcctgtcggaattgcttgaatttgcaact |
101 |
Q |
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| T |
15412689 |
caaacacgtcatacatctgatccacgttattatgtatatattagcggagaaattaacacgccgtctgacttgcctgtcggaattgcttgaatttacaact |
15412788 |
T |
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| Q |
102 |
tgaaccaacttccttgtctcccctagaaaaatacaaagctcgtcggcgaaatcttttgaagattgtatcgatgggcatcgtattgcccgacaatacgaca |
201 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
15412789 |
tgaaccaacttccttgtctcccctggaaaaatacaaagctcgtcggcgaaatcttttgaagattgtatcaatgggcatcgtattgcccgaaaatacgaca |
15412888 |
T |
|
| Q |
202 |
tgctcgcgaggccattgttt--gagcatagtggaggcatctgaagtccaagtttcatcttgaaaccaagagattgaagattcaacggtttcctatatgta |
299 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15412889 |
tgctcgcgaggccattgtttaagagcatagtggaggcatctgaagtccaagtttcatcttgagaccaagagattgaagattcaacggtttcctatatgta |
15412988 |
T |
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| Q |
300 |
tagtttcaaatttttatgttgtttatttcaatgaatatgaagatctaaatttcttagataaca |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15412989 |
tagtttcaaatttttatgttgtttatttcaatgaatatgaacatctaaatttcttagataaca |
15413051 |
T |
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