View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8087_low_20 (Length: 396)

Name: NF8087_low_20
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8087_low_20
NF8087_low_20
[»] chr6 (2 HSPs)
chr6 (1-380)||(11390870-11391253)
chr6 (1-380)||(11419396-11419754)
[»] chr3 (10 HSPs)
chr3 (316-380)||(24614763-24614827)
chr3 (319-380)||(24116550-24116611)
chr3 (316-380)||(23689864-23689928)
chr3 (316-380)||(24062101-24062165)
chr3 (316-380)||(24108840-24108904)
chr3 (204-272)||(23693424-23693492)
chr3 (204-272)||(23711864-23711932)
chr3 (204-272)||(23730320-23730388)
chr3 (204-272)||(23748775-23748843)
chr3 (204-272)||(24108734-24108802)


Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 11391253 - 11390870
Alignment:
Q  1 caaattcaccaaaattggtactaaattttctacattaatt----gatgaaaaatatccaacatatgtatacattaatataaggttttcaagctcctctta 96  Q
    ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  11391253 caaattcaccaaaattggtactaaattttctacattaattaattgatgaaaaatatccaacatatgtatacattaatataaggctttcaagttcctctta 11391154  T
Q  97 ataaactgaaaagaaaaatattgtcccatattgagacaaattctatgataaaaaagttttttggagatttctcttttagcaacacatgcaacctcacaat 196  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11391153 ataatctgaaaagaaaaatattgtcccatattgagacaaattctatgataaaaaagttttttggagatttctcttttagcaacacatgcaacctcacaat 11391054  T
Q  197 aatctcgacttgaaaatttcctaaaaacatgcatggttccatctctacaaatttcattgcacaattcaatcataaccatagcacacgatcttaactcctt 296  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11391053 aatctcgacttgaaaatttcctaaaaacatgcattgttccatctctacaaatttcattgcacaattctatcataaccatagcacacgatcttaactcctt 11390954  T
Q  297 ctccgagtatccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacac 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390953 ctccgagtatccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacac 11390870  T

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Target: chr6; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 11419396 - 11419754
Alignment:
Q  1 caaattcaccaaaattggtactaaattttctacattaattgatgaaaaatatccaacatatgtatacattaatataaggttttcaagctcctcttaataa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||   |||||||    
T  11419396 caaattcaccaaaattgatactaaattttctacattaattgatgaaaaatatcgaacatatgtatacattaatataaggctttgaagctc---ttaataa 11419492  T
Q  101 actgaaaagaaaaatattgtcccatattgagacaaattctatgataaaaaagttttttggagatttctcttttagcaacacatgcaacctcacaataatc 200  Q
    ||||||||||| ||||                  ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11419493 actgaaaagaacaata------------------aattctaggataaaaaagttttttggagatttctcttttagcaaaacatgcaacctcacaataatc 11419574  T
Q  201 tcgacttgaaaatttcctaaaaacatgcatggttccatctctacaaatttcattgcacaattcaatcataaccatagcacacgatcttaactccttctcc 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  11419575 tcgacttgaaaatttcctaaaaacatgcattgttccatctctacaaatttcattgcagaattctatcataaccatagcacacgatcttaactccttctcc 11419674  T
Q  301 gagtatccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacac 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419675 gagtatccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacac 11419754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 24614827 - 24614763
Alignment:
Q  316 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacac 380  Q
    ||||| ||||||||||||||| |||| || ||||||||||||| |||||  ||||||||||||||    
T  24614827 gtacacatcttcaaatcattgctccaaaagggataccttccaacaacaaaccttgcacaatacac 24614763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 380
Target Start/End: Original strand, 24116550 - 24116611
Alignment:
Q  319 catatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacac 380  Q
    |||||||||||||||||| |||| || ||||||||| ||| |||||  ||||||||||||||    
T  24116550 catatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacac 24116611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 23689928 - 23689864
Alignment:
Q  316 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacac 380  Q
    ||||| ||||||||||||||| |||| || ||||||||| ||| |||||  ||||||||||||||    
T  23689928 gtacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacac 23689864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 24062165 - 24062101
Alignment:
Q  316 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacac 380  Q
    ||||| ||||||||||||||| |||| || ||||||||| ||| |||||  ||||||||||||||    
T  24062165 gtacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacac 24062101  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 24108840 - 24108904
Alignment:
Q  316 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacac 380  Q
    ||||| ||||||||||||||| |||| || ||||||||| ||| |||||  ||||||||||||||    
T  24108840 gtacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacac 24108904  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 23693492 - 23693424
Alignment:
Q  204 acttgaaaatttcctaaaaacatgcatggttccatctctacaaatttcattgcacaattcaatcataac 272  Q
    ||||||||||||| ||||||| | |||| |||| |||| |||||||| | ||||| |||| ||||||||    
T  23693492 acttgaaaatttcataaaaacttccatgattccctctccacaaatttgaatgcacgattccatcataac 23693424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 23711932 - 23711864
Alignment:
Q  204 acttgaaaatttcctaaaaacatgcatggttccatctctacaaatttcattgcacaattcaatcataac 272  Q
    ||||||||||||| ||||||| | |||| |||| |||| |||||||| | ||||| |||| ||||||||    
T  23711932 acttgaaaatttcataaaaacttccatgattccctctccacaaatttgaatgcacgattccatcataac 23711864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 23730388 - 23730320
Alignment:
Q  204 acttgaaaatttcctaaaaacatgcatggttccatctctacaaatttcattgcacaattcaatcataac 272  Q
    ||||||||||||| ||||||| | |||| |||| |||| |||||||| | ||||| |||| ||||||||    
T  23730388 acttgaaaatttcataaaaacttccatgattccctctccacaaatttgaatgcacgattccatcataac 23730320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 23748843 - 23748775
Alignment:
Q  204 acttgaaaatttcctaaaaacatgcatggttccatctctacaaatttcattgcacaattcaatcataac 272  Q
    ||||||||||||| ||||||| | |||| |||| |||| |||||||| | ||||| |||| ||||||||    
T  23748843 acttgaaaatttcataaaaacttccatgattccctctccacaaatttgaatgcacgattccatcataac 23748775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 24108734 - 24108802
Alignment:
Q  204 acttgaaaatttcctaaaaacatgcatggttccatctctacaaatttcattgcacaattcaatcataac 272  Q
    ||||||||||||| ||||||| | ||||  ||||||||||||||||| | ||||| | || ||||||||    
T  24108734 acttgaaaatttcttaaaaacttccatgtatccatctctacaaatttgaatgcacgaatccatcataac 24108802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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