View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_21 (Length: 388)
Name: NF8087_low_21
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 33531866 - 33531497
Alignment:
| Q |
1 |
tatattcactctaacaaagatcactaataaaagttctaagaaaagacttgaaatcattttaaagctaaaggttcagttaaaatgtttttacaagttcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531866 |
tatattcactctaacaaagatcactaataaaagttctaagaaaagacttgaaatcattttaaagctaaaggttcagttaaaatgtttttacaagttcttt |
33531767 |
T |
|
| Q |
101 |
gtcaaagaatttttcttgaactaagacaaagtgctttataagaaggcattgaaactgactaattttattttaaaatgttgtttgatcatccagaacttgg |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531766 |
gtcaaagaatttttcttcaactaagacaaagtgctttataagaaggcattgaaactgactaattttattttaaaatgttgtttgatcatccagaacttgg |
33531667 |
T |
|
| Q |
201 |
gatattatcgaagtgtgcctagtattgggtttcctatgtaattgtatcttaagtgaaatgtgaactcaagacttggaataaaagattttttgtggagatg |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531666 |
gatattatcgaagtgtgcctattattgggtttcctatgtaattgtatcttaagtgaaatgtgaactcaagacttggaataaaagattttttgtggagatg |
33531567 |
T |
|
| Q |
301 |
ttcacatgcaagtggatgcagctttattggtttagagaactaaggaacaattgtattcttatggcatctc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531566 |
ttcacatgcaagtggatgcagctttattggtttagagaactaaggaacaattgtattcttatggcatctc |
33531497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 16869481 - 16869850
Alignment:
| Q |
1 |
tatattcactctaacaaagatcactaataaaagttctaagaaaagacttgaaatcattttaaagctaaaggttcagttaaaatgtttttacaagttcttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16869481 |
tatattcactctaacaaagatcactaataaaagttctaagaaaagacttgaaatcattttaaagctaaaggttcagttaaaatgtttttacaagttcttt |
16869580 |
T |
|
| Q |
101 |
gtcaaagaatttttcttgaactaagacaaagtgctttataagaaggcattgaaactgactaattttattttaaaatgttgtttgatcatccagaacttgg |
200 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16869581 |
gtcaaagaatttttcttcaactaagacaaagtgctttataagaaggcattgaaactgactaattttattttaaaatgttgtttgatcatccagaacttgg |
16869680 |
T |
|
| Q |
201 |
gatattatcgaagtgtgcctagtattgggtttcctatgtaattgtatcttaagtgaaatgtgaactcaagacttggaataaaagattttttgtggagatg |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16869681 |
gatattatcgaagtgtgcctattattgggtttcctatgtaattgtatcttaagtgaaatgtgaactcaagacttggaataaaagattttttgtggagatg |
16869780 |
T |
|
| Q |
301 |
ttcacatgcaagtggatgcagctttattggtttagagaactaaggaacaattgtattcttatggcatctc |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16869781 |
ttcacatgcaagtggatgcagctttattggtttagagaactaaggaacaattgtattcttatggcatctc |
16869850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 25015176 - 25015295
Alignment:
| Q |
35 |
tctaagaaaagacttgaaatcattttaaa-gctaaaggttcagttaaaatgtttttacaagttctttgtcaaagaatttttcttgaactaagacaaagtg |
133 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| || ||| |
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| T |
25015176 |
tctatgaaaagacttgaaatcatttaaaatgctaaaggcacagttaaaatgtttttacaagttctttgtcaaagaatttttcttcaaataaggcagtgtg |
25015275 |
T |
|
| Q |
134 |
ctttataagaaggcattgaa |
153 |
Q |
| |
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|||||||| |||||||||| |
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| T |
25015276 |
ttttataagcaggcattgaa |
25015295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 24992650 - 24992771
Alignment:
| Q |
33 |
gttctaagaaaagacttgaaatcattttaaa-gctaaaggttcagttaaaatgtttttacaagttctttgtcaaagaatttttcttgaactaagacaaag |
131 |
Q |
| |
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|||||| |||||||||||||||||||||||| || |||| ||||| ||||||||||||| || |||||||| ||||||||||| || |||||| | |
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| T |
24992650 |
gttctatgaaaagacttgaaatcattttaaaagcacaaggcacagtttaaatgtttttacagattatttgtcaaggaatttttcttcaaataagactatt |
24992749 |
T |
|
| Q |
132 |
tgctttataagaaggcattgaa |
153 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
24992750 |
tgttttataagaaggcattgaa |
24992771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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