View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_22 (Length: 378)
Name: NF8087_low_22
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 648897 - 649241
Alignment:
| Q |
19 |
attggaggaaaaccgccatacttaatggtattcttcattttcgtgccttttcacccttcaattatcgttgaacatgcttgttgtaacatgcctaatagaa |
118 |
Q |
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| T |
648897 |
attggaggaaaaccgccatacttaatggtattcttcattttcgtgcctgttcacccttcaattatcgttgaacatgcttgttgtaacatgcctaatagaa |
648996 |
T |
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| Q |
119 |
gtatttgaagctataatagcttaccttcattaaaaaatannnnnnnnnnnnngttgaacacgtttgttgtaacgtgctcaaataggataagcattttaag |
218 |
Q |
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| T |
648997 |
gtatttgaagctataatagcttaccttcattaaaaaatatttttttatttttgttgaacacgtttgttgtaacgtgctcaaataggataagcattttaag |
649096 |
T |
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| Q |
219 |
ctagaggagcatacctgcataaatcatatcttggtgactggaagtatttcctttatctaaacttctagtaacacattgctgtttgtgatgcttataaaca |
318 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
649097 |
ctagaagagcatacctgcataaatcatatcttggtgactggaagtatttcctttatctaaacttctagtaacacattgctgtttgtgatgcttataaaca |
649196 |
T |
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| Q |
319 |
gaaattttaaaattatggtttgctttgttgtattgattgtgatgt |
363 |
Q |
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| T |
649197 |
gaaattttaaaattatggtttgctttgttgtattgattgtgatgt |
649241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 239089 - 238951
Alignment:
| Q |
177 |
cacgtttgttgtaacgtgctcaaataggataagcattttaagctagaggagcatacctgcataaatcatatcttggtgactggaagtatttcctttatct |
276 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
239089 |
cacgtttgttgtaacatgctcaaataggataagcaatttaagctagaagagcatccctgcataaatcatatcttggtaactggaaatatttcctttatct |
238990 |
T |
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| Q |
277 |
aaacttctagtaacacattgctgtttgtgatgcttataa |
315 |
Q |
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|||||| ||||||||||||| ||| |||||||||||||| |
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| T |
238989 |
aaacttatagtaacacattgttgtgtgtgatgcttataa |
238951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 686294 - 686334
Alignment:
| Q |
19 |
attggaggaaaaccgccatacttaatggtattcttcatttt |
59 |
Q |
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||||| |||||||| |||||||||||||||||||||||||| |
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| T |
686294 |
attgggggaaaacccccatacttaatggtattcttcatttt |
686334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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