View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_23 (Length: 377)
Name: NF8087_low_23
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_23 |
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| [»] scaffold0188 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 32933475 - 32933129
Alignment:
| Q |
13 |
gagaagaacagtgacacacgagttaataatagaaaaccaatggatttccaagtgatgtgagagtgaggatgtctgtgagtatttctccaaccttttctca |
112 |
Q |
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| T |
32933475 |
gagaagaacggtgacacacgagttaataatagaaaaccaatggatttccaagtgatgtgagagtgaggatgtctgtgagtatttctccaaccttttctca |
32933376 |
T |
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| Q |
113 |
aatggaatatctgtttcaatccatttgacagaatatgtgaaatccacatttacctctctatcttctgtcaagtccacaacagcattcggatcatttttaa |
212 |
Q |
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| T |
32933375 |
aatggaatatctgtttcaatccatttgacagaatatgtgaaatccacatttacctctctatcttctgtcaagtccacaacagcattcggatcatttttaa |
32933276 |
T |
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| Q |
213 |
cgaaaacatcgataatacgatcgttattgtacagaatctcaaaatgaacatttctaaaaagataaactgtggcctcatttgtgtcaacatctttttcatc |
312 |
Q |
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| T |
32933275 |
cgaaaacatcgataatacgatcgttattgtacagaatctcaaaatgaacatttctaaaaagataaactgtggcctcgtttgtgtcaacatctttttcatc |
32933176 |
T |
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| Q |
313 |
agtttcaaatcttccaaggaaaccccaaattggcaagtcatcatagt |
359 |
Q |
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| T |
32933175 |
agtttcaaatcttccaaggaaaccccaaattggcaagtcatcatagt |
32933129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 181 - 304
Target Start/End: Complemental strand, 16899 - 16776
Alignment:
| Q |
181 |
caagtccacaacagcattcggatcatttttaacgaaaacatcgataatacgatcgttattgtacagaatctcaaaatgaacatttctaaaaagataaact |
280 |
Q |
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| T |
16899 |
caagtccacgacagcgttcagatcatttttaacgaatacatcgataatacgatcgttattgtacaaaatctcaaaatgaaaattcgtaaaaagataaact |
16800 |
T |
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| Q |
281 |
gtggcctcatttgtgtcaacatct |
304 |
Q |
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| T |
16799 |
gttgcctcatttgtgtcaacatct |
16776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 16953 - 16919
Alignment:
| Q |
146 |
tatgtgaaatccacatttacctctctatcttctgt |
180 |
Q |
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| T |
16953 |
tatgtgaaatctacatttacctctctatcttctgt |
16919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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