View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8087_low_31 (Length: 293)
Name: NF8087_low_31
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 7104226 - 7104449
Alignment:
| Q |
26 |
gtatataaaaggtaacatagagatacaatagtaagtttgaaacaactttccctattagaatgagtgcgtattctaaagtcttttgcagaaaatgttactt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7104226 |
gtatataaaaggtaacatagagatacaacagtaagtttcaaacaactttccctattagaat--------attctaaagtcttttgcagaaaatgttactt |
7104317 |
T |
|
| Q |
126 |
ctacccaagaaaacataagactagaaattcaatcattcgagagaaaaagatggtataatctcatcttaggtggtttcgatgggagacatcaaatacataa |
225 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7104318 |
ctacccaagacaacataagactagaaattcaatcattctagagaaaaagatggtataatctcatcttaggtggtttcgatgggagacatcaaatacataa |
7104417 |
T |
|
| Q |
226 |
cattgaagtcaagatgttcatagttttttaca |
257 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
7104418 |
cattgaagtctagatgttcatagttttttaca |
7104449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 44 - 257
Target Start/End: Original strand, 7109519 - 7109732
Alignment:
| Q |
44 |
agagatacaatagtaagtttgaaacaactttccctattagaatgagtgcgtattctaaagtcttttgcagaaaatgttacttctacccaagaaaacataa |
143 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
7109519 |
agagatacaacagcaagtttcaaacaactttccctattagaatgagtgcgtattctaaagtcttttgcagaacatgttacttctacccaagacaacataa |
7109618 |
T |
|
| Q |
144 |
gactagaaattcaatcattcgagagaaaaagatggtataatctcatcttaggtggtttcgatgggagacatcaaatacataacattgaagtcaagatgtt |
243 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7109619 |
gactagaaattcaatcattcaagagaaaaagatggtataatctcatcttaggtggttttgatgggagacatcaaatacataacattgaagtctagatgtt |
7109718 |
T |
|
| Q |
244 |
catagttttttaca |
257 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7109719 |
catagttttttaca |
7109732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 3503048 - 3502973
Alignment:
| Q |
126 |
ctacccaagaaaacataagactagaaattcaatcattcgagagaaaaagatggtataatctcatcttaggtggttt |
201 |
Q |
| |
|
|||| ||||| || ||| ||||| ||| |||||| || |||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
3503048 |
ctacacaagataagataggactacaaagtcaatcgttagagagaaaaagatggtccaatctcaacttaggtggttt |
3502973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University