View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8087_low_33 (Length: 286)
Name: NF8087_low_33
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 11818296 - 11818566
Alignment:
| Q |
1 |
tatatgaaggtaaaaatgaaaatataggaaatagttaccatgagtcctttacgaaaagcaaaaccaggaaggttaatgggcatagagaacaaagcagcat |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11818296 |
tatatgaaggtaaaactgaaaatataggaaatagttaccatgagtcctttacgaaaagcaaaaccaggaaggttaatgggcatagagaacaaagcagcat |
11818395 |
T |
|
| Q |
101 |
gcatatcagtaaaagaattccctattttcgtaatgatatgttgattgtaagagcccaagaaaatatcaatgatgatattaaaggaaatatttttcatttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11818396 |
gcatatcagtaaaagaattccctattttcgtaatgatatgttgattgtaagagcccaagaaaatatcaatgatgatattaaaggaaatatttttcatttc |
11818495 |
T |
|
| Q |
201 |
cttcaaaaattcaattgagtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatac |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11818496 |
cttcaaaaattcaattgagtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatac |
11818566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 263
Target Start/End: Original strand, 11826646 - 11826866
Alignment:
| Q |
43 |
agtcctttacgaaaagcaaaaccaggaaggttaatgggcatagagaacaaagcagcatgcatatcagtaaaagaattccctattttcgtaatgatatgtt |
142 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||| | |||| | | || ||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
11826646 |
agtcctttatggaaagcaaaaccaggaaggttaatgggcatagagaatagagcaccgtaaatttcagtaaaagaatcccctatttttgtaatgatgtgtt |
11826745 |
T |
|
| Q |
143 |
gattgtaagagcccaagaaaatatcaatgatgatattaaaggaaatatttttcatttccttcaaaaattcaattgagtgactcatgctagaaagttcctc |
242 |
Q |
| |
|
||||||||||||| | || |||||| | ||||| | |||||||||||| ||||| || |||||||| || | | |||| |||| ||||||| |||||| |
|
|
| T |
11826746 |
gattgtaagagcctatgagaatatctacgatgacctgaaaggaaatattcttcatctctttcaaaaactccacttggtgattcatactagaaatttcctc |
11826845 |
T |
|
| Q |
243 |
caaagaattgatcacaatgtc |
263 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
11826846 |
caaagaatttatcacaatgtc |
11826866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 271
Target Start/End: Original strand, 11804333 - 11804575
Alignment:
| Q |
29 |
aaatagttaccatgagtcctttacgaaaagcaaaaccaggaaggttaatgggcatagagaacaaagcagcatgcatatcagtaaaagaattccctatttt |
128 |
Q |
| |
|
||||| ||||| ||||||||||| | |||||||| |||||||||| ||| |||||| || | ||||||||| | ||||| |||||||||| ||||||| |
|
|
| T |
11804333 |
aaatatttaccttgagtcctttatggaaagcaaagccaggaaggtcaataggcatacagtataaagcagcaaaaacatcagaaaaagaattctctatttt |
11804432 |
T |
|
| Q |
129 |
cgtaatgatatgttgattgtaagagcccaagaaaatatcaatgatgatattaaaggaaatatttttcatttccttcaaaaattcaattgagtgactcatg |
228 |
Q |
| |
|
|||| ||| | || |||||||||||||| | |||| ||| ||||||| ||||||||| | ||||| || |||||||| || | || |||| |||| |
|
|
| T |
11804433 |
ggtaaggatgtttttattgtaagagcccataataatagaaattatgatatcaaaggaaatgctcttcatctctttcaaaaactccactgggtgattcata |
11804532 |
T |
|
| Q |
229 |
ctagaaagttcctccaaagaattgatcacaatgtcttcaatac |
271 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
11804533 |
ctagaaatttcctccatagaattgattacaatgtcctcaatac |
11804575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 271
Target Start/End: Complemental strand, 20573655 - 20573495
Alignment:
| Q |
111 |
aaaagaattccctattttcgtaatgatatgttgattgtaagagcccaagaaaatatcaatgatgatattaaaggaaatatttttcatttccttcaaaaat |
210 |
Q |
| |
|
|||||||||| ||||||| |||| ||| |||| |||||||||||||| | |||| ||| ||||||| ||||||||| | ||||| || |||||||| |
|
|
| T |
20573655 |
aaaagaattctctattttggtaaggatgtgtttattgtaagagcccataataatagaaattatgatatcaaaggaaatgctcttcatctctttcaaaaac |
20573556 |
T |
|
| Q |
211 |
tcaattgagtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatac |
271 |
Q |
| |
|
| | |||| |||| ||||||| || |||||||||||||||||||||||| ||||||| |
|
|
| T |
20573555 |
gacactaggtgattcatactagaaattttctccaaagaattgatcacaatgtcctcaatac |
20573495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 271
Target Start/End: Original strand, 17513411 - 17513571
Alignment:
| Q |
111 |
aaaagaattccctattttcgtaatgatatgttgattgtaagagcccaagaaaatatcaatgatgatattaaaggaaatatttttcatttccttcaaaaat |
210 |
Q |
| |
|
|||||||||| ||||||| |||| ||| |||| |||||||||||||| | |||| ||| ||||||| ||||||||| | ||||| || |||||||| |
|
|
| T |
17513411 |
aaaagaattctctattttggtaaggatgtgtttattgtaagagcccataataatagaaattatgatatcaaaggaaatgctcttcatctctttcaaaaac |
17513510 |
T |
|
| Q |
211 |
-tcaattgagtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatac |
271 |
Q |
| |
|
||| | | |||| |||| ||||||| || |||||||||||||||||||||||| ||||||| |
|
|
| T |
17513511 |
gtcactag-gtgattcatactagaaattttctccaaagaattgatcacaatgtcctcaatac |
17513571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 271
Target Start/End: Complemental strand, 17539803 - 17539643
Alignment:
| Q |
111 |
aaaagaattccctattttcgtaatgatatgttgattgtaagagcccaagaaaatatcaatgatgatattaaaggaaatatttttcatttccttcaaaaat |
210 |
Q |
| |
|
|||||||||| ||||||| |||| ||| |||| |||||||||||||| | |||| ||| ||||||| ||||||||| | ||||| || |||||||| |
|
|
| T |
17539803 |
aaaagaattctctattttggtaaggatgtgtttattgtaagagcccataataatagaaattatgatatcaaaggaaatgctcttcatctctttcaaaaac |
17539704 |
T |
|
| Q |
211 |
-tcaattgagtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatac |
271 |
Q |
| |
|
||| | | |||| |||| ||||||| || |||||||||||||||||||||||| ||||||| |
|
|
| T |
17539703 |
gtcactag-gtgattcatactagaaattttctccaaagaattgatcacaatgtcctcaatac |
17539643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University