View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_35 (Length: 271)
Name: NF8087_low_35
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_35 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 9352945 - 9353213
Alignment:
| Q |
13 |
aatatatccaagcttcacataatactgctgataaagctgaccg----------tagataatttctagtttgatatgtttctctagcaagtatatgatgaa |
102 |
Q |
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| T |
9352945 |
aatatatccaagcttcacataacactgctgataaagctgaccggttggttctctagataatttctagtttgatatgtttctctagcaagtatatgatgaa |
9353044 |
T |
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| Q |
103 |
tgatgatagtttgtgtctcctttcagggcacaacttaacaaggcatatgagactgctaatgttctttttgaggttttgaaggctgttcatgaaccaatct |
202 |
Q |
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| T |
9353045 |
taatgatagtttgtgtctcctttcaggggacaacttaacaaggcatatgagactgctaatgttctttttgaggttttgaaggctgttcatgaaccaatct |
9353144 |
T |
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| Q |
203 |
acatatagaagttgatcgcgaggttattttctatggctcctaagattttgtttttgttattagtgttac |
271 |
Q |
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| T |
9353145 |
atatatagaagttgatcgcgaggttattttctatggctcctaagattttgtttttgttattagtgttac |
9353213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 94 - 249
Target Start/End: Complemental strand, 424829 - 424676
Alignment:
| Q |
94 |
tatgatgaatgatgatagtttgtgtctcctttcagggcacaacttaacaaggcatatgagactgctaatgttctttttgaggttttgaaggctgtt--ca |
191 |
Q |
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| T |
424829 |
tatgatgagtgatgatagttcttctcttctttcagcgcacaacttaccaaggcatatcagactgctaatgttctttttgaggttttgaaggccgttaaca |
424730 |
T |
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| Q |
192 |
tgaaccaatctacatatagaagttgatcgcgaggttattttctatggctcctaagatt |
249 |
Q |
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| T |
424729 |
tgacccaatc----tatggaagttgatcgcgaggttattttctatggctcctaagatt |
424676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 650942 - 651037
Alignment:
| Q |
94 |
tatgatgaatgatgatagtttgtgtctcctttc-agggcacaacttaacaaggcatatgagactgctaatgttctttttgaggttttgaaggctgt |
188 |
Q |
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| T |
650942 |
tatgatgaataatgatggtttgtctcttgtttccagcacacaacttaccaaggcatatcagactgctaatgttctttttgatgttttgaaggctgt |
651037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 52597246 - 52597313
Alignment:
| Q |
122 |
ctttcagggcacaacttaacaaggcatatgagactgctaatgttctttttgaggttttgaaggctgtt |
189 |
Q |
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| T |
52597246 |
ctttcagtgcacagctaaccaaggcatatcagactgctaatgttctttttgaggttttgaaagctgtt |
52597313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 52597126 - 52597166
Alignment:
| Q |
15 |
tatatccaagcttcacataatactgctgataaagctgaccg |
55 |
Q |
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| T |
52597126 |
tatatccaagctttacaaaatgctgctgataaagctgaccg |
52597166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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