View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_4 (Length: 656)
Name: NF8087_low_4
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 612; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 18 - 645
Target Start/End: Complemental strand, 40656464 - 40655837
Alignment:
| Q |
18 |
cccgtaactatagtagtttgactcagaatgtgatcaagcttctccattgccggggccacaactgaggtagttgttgatgacggtgcttctcttcctggag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40656464 |
cccgtaactatagtagtttgactcagaatgtgatcaagcttctccattgccggggccacaactgaggtagttgttgatgacggtgcttctcttcctggag |
40656365 |
T |
|
| Q |
118 |
tttcaacagagacactgacgacatttgtgctcaagttcattccagtctgagagatgtctctcatcctcctgcggatcttctgcaactctttcccaacctt |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40656364 |
tttcaacagagacactgacgacatttgtgttcaagttcattccagtctgagagatgtctctcatcctcctgcggatcttctgcaactctttcccaacctt |
40656265 |
T |
|
| Q |
218 |
gtgtttgtcaatccaatacagaactccccatctcctccttttcaccgatttgatcacaaacgtttctatcacatcctctgcatcaccagcaacttccttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40656264 |
gtgtttgtcaatccaatacagaactccccatctcctccttttcaccgatttgatcacaaacgtttctatcacatcctctgcatcaccagcaacttccttc |
40656165 |
T |
|
| Q |
318 |
aacttctcttcccactcattaaactcttgttcttgttctccgtacgcacgctgcccggcctgttccaacaatccctgcattgacctcagctctctttcaa |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40656164 |
aacttctcttcccactcattaaactcttgttcttgttctccgtacgcacgctgcccggcctgttccaacaatccctgcattgacctcagctctctttcaa |
40656065 |
T |
|
| Q |
418 |
tccattctacgtgcctaattgtcccaccacccaacactgcatactcttcaatcaggattttggatagaccgtttgcgacatcggcggctgataaagctaa |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
40656064 |
tccattctacgtgcctaattgtcccaccacccaacactgcatactcttcaatcaggattttggatagaccgtttgcgacgttggcggctgataaagctaa |
40655965 |
T |
|
| Q |
518 |
tgaaattccaatgtcggccatgctcaggtaatattaatgatgtaagctctattatttagtgaatattttctcatgctttttcaattctaatttgctttct |
617 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40655964 |
tgaaattccaatgtcggccatgctcaagtaatattaatgatgtaagctctattatttagtgaatattttctcatgctttttcaattctaatttgctttct |
40655865 |
T |
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| Q |
618 |
ttggactcagttggaagaggaccaagat |
645 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
40655864 |
ttggactcagttggaagaggaccaagat |
40655837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 163 - 433
Target Start/End: Complemental strand, 40635737 - 40635467
Alignment:
| Q |
163 |
tctgagagatgtctctcatcctcctgcggatcttctgcaactctttcccaaccttgtgtttgtcaatccaatacagaactccccatctcctccttttcac |
262 |
Q |
| |
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||||||||||||||||||||||| | ||||||| || || |||||| ||||| |||| ||| ||| ||||| || ||| ||||| |||||||| || || |
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| T |
40635737 |
tctgagagatgtctctcatcctctttcggatctcctccagctcttttccaactttgtatttatcataccaatgcaaaacaccccacctcctcctcttgac |
40635638 |
T |
|
| Q |
263 |
cgatttgatcacaaacgtttctatcacatcctctgcatcaccagcaacttccttcaacttctcttcccactcattaaactcttgttcttgttctccgtac |
362 |
Q |
| |
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|||||||| || |||||||||||||||| || |||||| |||||| |||||||||||||| |||| || || ||||||||||| |||||||| | | |
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| T |
40635637 |
tgatttgatgacgaacgtttctatcacattctttgcatctagagcaacatccttcaacttctccgcccattctttcaactcttgttcctgttctccatcc |
40635538 |
T |
|
| Q |
363 |
gcacgctgcccggcctgttccaacaatccctgcattgacctcagctctctttcaatccattctacgtgcct |
433 |
Q |
| |
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| |||||| | ||||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||| |
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| T |
40635537 |
ccgcgctgctcaacctgttctaacaatccccgcattgacctcagctctttctcaatccattctacgtgcct |
40635467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 163 - 478
Target Start/End: Original strand, 40629398 - 40629710
Alignment:
| Q |
163 |
tctgagagatgtctctcatcctcctgcggatcttctgcaactctttcccaaccttgtgtttgtcaatccaatacagaactccccatctcctccttttcac |
262 |
Q |
| |
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|||||||||| |||||||||||| | |||||||||| || |||||| |||||||||| ||||||| ||||| || ||||||||| |||||||| ||||| |
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| T |
40629398 |
tctgagagatatctctcatcctctttcggatcttctccagctcttttccaaccttgtatttgtcataccaatgcaaaactccccacctcctcctcttcac |
40629497 |
T |
|
| Q |
263 |
cgatttgatcacaaacgtttctatcacatcctctgcatcaccagcaacttccttcaacttctcttcccactcattaaactcttgttcttgttctccgtac |
362 |
Q |
| |
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||||| ||||||||||| |||||||| |||| |||||| |||||| || |||||||||||| |||| || ||| ||||||| ||||| || | | |
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| T |
40629498 |
tgattttatcacaaacgtatctatcacgtcctttgcatccaaagcaacatctttcaacttctctgcccattctcgcaacgcttgttcctgttcgccttcc |
40629597 |
T |
|
| Q |
363 |
gcacgctgcccggcctgttccaacaatccctgcattgacctcagctctctttcaatccattctacgtgcctaattgtcccaccacccaacactgcatact |
462 |
Q |
| |
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| || || | ||| || ||||||||| |||||||||||||||| | ||||||||||||||||| || || || | |||||||| ||||||| |
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| T |
40629598 |
ccgcgttgttcaatctgctctaacaatcccatcattgacctcagctctttctcaatccattctacgtgtctcgctg---catcccccaacaccgcatact |
40629694 |
T |
|
| Q |
463 |
cttcaatcaggatttt |
478 |
Q |
| |
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|||||||||||||||| |
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| T |
40629695 |
cttcaatcaggatttt |
40629710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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