View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8087_low_42 (Length: 243)

Name: NF8087_low_42
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8087_low_42
NF8087_low_42
[»] chr1 (6 HSPs)
chr1 (88-150)||(50111593-50111655)
chr1 (168-226)||(50111640-50111698)
chr1 (1-89)||(30631732-30631816)
chr1 (51-92)||(32939002-32939043)
chr1 (1-30)||(35846261-35846290)
chr1 (43-79)||(35846216-35846252)
[»] chr6 (4 HSPs)
chr6 (43-81)||(33720149-33720187)
chr6 (43-91)||(26378270-26378318)
chr6 (43-86)||(24752369-24752412)
chr6 (47-88)||(10521265-10521306)
[»] chr2 (4 HSPs)
chr2 (43-88)||(1095724-1095769)
chr2 (1-87)||(11229210-11229292)
chr2 (1-81)||(43725305-43725381)
chr2 (1-30)||(5067583-5067612)
[»] chr7 (4 HSPs)
chr7 (1-86)||(47193027-47193108)
chr7 (1-88)||(45607124-45607207)
chr7 (1-87)||(25887683-25887765)
chr7 (43-88)||(155869-155914)
[»] chr8 (4 HSPs)
chr8 (43-86)||(7325852-7325895)
chr8 (1-90)||(24946102-24946184)
chr8 (48-92)||(1370179-1370223)
chr8 (2-30)||(38128468-38128496)
[»] chr3 (5 HSPs)
chr3 (43-90)||(51673001-51673048)
chr3 (47-90)||(36318166-36318209)
chr3 (43-89)||(7293986-7294032)
chr3 (1-30)||(20380831-20380860)
chr3 (1-30)||(41957613-41957642)
[»] chr5 (3 HSPs)
chr5 (43-88)||(11767878-11767923)
chr5 (47-88)||(21749501-21749542)
chr5 (43-87)||(1774174-1774218)
[»] scaffold0508 (1 HSPs)
scaffold0508 (1-30)||(11478-11507)
[»] chr4 (4 HSPs)
chr4 (1-30)||(1031855-1031884)
chr4 (1-30)||(31658019-31658048)
chr4 (1-30)||(34974553-34974582)
chr4 (47-87)||(41951678-41951718)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 50111593 - 50111655
Alignment:
Q  88 taaaacaaaatatgttttataacttttcaactttatgtgtagctttatgtttccacggaccct 150  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50111593 taaaacaaaatatgctttataacttttcaactttatgtgtagctttatgtttccacggaccct 50111655  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 50111640 - 50111698
Alignment:
Q  168 tgtttccacggaccctatcaccaaacaattaaattaaaataagtgccaattttatgggt 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50111640 tgtttccacggaccctatcaccaaacaattaaattaaaataagtgccaattttaagggt 50111698  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30631816 - 30631732
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaagnnnnnnnnnnnttgtaccaaaaattatctaaaatggttgttcaaatatcagtactcta 89  Q
    ||||||||||||||||||||||||||||||            ||||||||||| || |||||||||||||||||||||||| |||||||    
T  30631816 ccattgtttttgaccaatgaaaagtgagaa----aaaagaagttgtaccaaaagttgtctaaaatggttgttcaaatatcactactcta 30631732  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 32939002 - 32939043
Alignment:
Q  51 aaaattatctaaaatggttgttcaaatatcagtactctaaaa 92  Q
    |||||||| |||||| ||||||||||||||| ||||||||||    
T  32939002 aaaattatttaaaatagttgttcaaatatcattactctaaaa 32939043  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 35846290 - 35846261
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  35846290 ccattgtttttgaccaatgaaaagtgagaa 35846261  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 35846252 - 35846216
Alignment:
Q  43 ttgtaccaaaaattatctaaaatggttgttcaaatat 79  Q
    ||||||||||| || ||||||||||||||||||||||    
T  35846252 ttgtaccaaaagttgtctaaaatggttgttcaaatat 35846216  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 33720149 - 33720187
Alignment:
Q  43 ttgtaccaaaaattatctaaaatggttgttcaaatatca 81  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33720149 ttgtaccaaaaattatctaaaatggttgttcaaatatca 33720187  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 26378318 - 26378270
Alignment:
Q  43 ttgtaccaaaaattatctaaaatggttgttcaaatatcagtactctaaa 91  Q
    ||||| ||||| || |||||||||||||||||||||||| |||||||||    
T  26378318 ttgtatcaaaagttgtctaaaatggttgttcaaatatcactactctaaa 26378270  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 24752369 - 24752412
Alignment:
Q  43 ttgtaccaaaaattatctaaaatggttgttcaaatatcagtact 86  Q
    ||||||||||| || |||||||||||||||||||||||| ||||    
T  24752369 ttgtaccaaaagttgtctaaaatggttgttcaaatatcactact 24752412  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 10521265 - 10521306
Alignment:
Q  47 accaaaaattatctaaaatggttgttcaaatatcagtactct 88  Q
    |||||||||||| |||||| ||||||||||||||| ||||||    
T  10521265 accaaaaattatataaaatagttgttcaaatatcactactct 10521306  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 1095769 - 1095724
Alignment:
Q  43 ttgtaccaaaaattatctaaaatggttgttcaaatatcagtactct 88  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||    
T  1095769 ttgtaccataaattatctaaaatggttgttcaaatttcagtactct 1095724  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 11229292 - 11229210
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaagnnnnnnnnnnnttgtaccaaaaattatctaaaatggttgttcaaatatcagtactc 87  Q
    ||||||||||||||||||||||||||||||            ||||||||||| || |||||||||||||||||||||||| |||||    
T  11229292 ccattgtttttgaccaatgaaaagtgagaa----aaaagaagttgtaccaaaagttgtctaaaatggttgttcaaatatcactactc 11229210  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 43725305 - 43725381
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaagnnnnnnnnnnnttgtaccaaaaattatctaaaatggttgttcaaatatca 81  Q
    ||||||||||||||||||||||||||||||            ||||||||||| || ||||||||||||||||||||||||    
T  43725305 ccattgtttttgaccaatgaaaagtgagaa----aaaagaagttgtaccaaaagttgtctaaaatggttgttcaaatatca 43725381  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 5067612 - 5067583
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  5067612 ccattgtttttgaccaatgaaaagtgagaa 5067583  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 47193027 - 47193108
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaagnnnnnnnnnnnttgtaccaaaaattatctaaaatggttgttcaaatatcagtact 86  Q
    ||||||||||||||||||||||||||||||            ||||||||||| ||||||||||||||||||||||||||| ||||    
T  47193027 ccattgtttttgaccaatgaaaagtgagaa----aaaagaagttgtaccaaaagttatctaaaatggttgttcaaatatcactact 47193108  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 45607124 - 45607207
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaagnnnnnnnnnnnttgtaccaaaaattatctaaaatggttgttcaaatatcagtactct 88  Q
    ||||||||||||||||||||||||||||||            ||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  45607124 ccattgtttttgaccaatgaaaagtgagaa----aaaagaagttgtaccaaaagttatctaaaatagttgttcaaatatcactactct 45607207  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 25887683 - 25887765
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaagnnnnnnnnnnnttgtaccaaaaattatctaaaatggttgttcaaatatcagtactc 87  Q
    ||||||||||||||||||||||||||||||            ||||||||||| || |||||||||||||||||||||||| |||||    
T  25887683 ccattgtttttgaccaatgaaaagtgagaa----aaaagaagttgtaccaaaagttgtctaaaatggttgttcaaatatcactactc 25887765  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 155914 - 155869
Alignment:
Q  43 ttgtaccaaaaattatctaaaatggttgttcaaatatcagtactct 88  Q
    ||||| ||||| || |||||||||||||||||||||||| ||||||    
T  155914 ttgtatcaaaagttgtctaaaatggttgttcaaatatcactactct 155869  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 7325852 - 7325895
Alignment:
Q  43 ttgtaccaaaaattatctaaaatggttgttcaaatatcagtact 86  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||    
T  7325852 ttgtaccaaaagttatctaaaatggttgttcaaatatcactact 7325895  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24946102 - 24946184
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaagnnnnnnnnnnnttgtaccaaaaattatctaaaatggttgttcaaatatcagtactctaa 90  Q
    ||||||||||||||||||||||||||||||            ||||||||||| || |||||||||||||||||||||||| | ||||||    
T  24946102 ccattgtttttgaccaatgaaaagtgagaa-------aaaagttgtaccaaaagttgtctaaaatggttgttcaaatatcactgctctaa 24946184  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 1370223 - 1370179
Alignment:
Q  48 ccaaaaattatctaaaatggttgttcaaatatcagtactctaaaa 92  Q
    ||||||||| ||| |||||| ||||||||||||| ||||||||||    
T  1370223 ccaaaaattgtctcaaatggatgttcaaatatcactactctaaaa 1370179  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 38128496 - 38128468
Alignment:
Q  2 cattgtttttgaccaatgaaaagtgagaa 30  Q
    |||||||||||||||||||||||||||||    
T  38128496 cattgtttttgaccaatgaaaagtgagaa 38128468  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 51673001 - 51673048
Alignment:
Q  43 ttgtaccaaaaattatctaaaatggttgttcaaatatcagtactctaa 90  Q
    ||||||||||| || |||||||||||||||||||||||| ||||||||    
T  51673001 ttgtaccaaaagttgtctaaaatggttgttcaaatatcactactctaa 51673048  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 36318209 - 36318166
Alignment:
Q  47 accaaaaattatctaaaatggttgttcaaatatcagtactctaa 90  Q
    |||||||||||| | |||||||||||||||||||| ||||||||    
T  36318209 accaaaaattatatgaaatggttgttcaaatatcattactctaa 36318166  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 7294032 - 7293986
Alignment:
Q  43 ttgtaccaaaaattatctaaaatggttgttcaaatatcagtactcta 89  Q
    ||||| ||||| || |||||||||||||||||||||||| |||||||    
T  7294032 ttgtatcaaaagttgtctaaaatggttgttcaaatatcactactcta 7293986  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 20380860 - 20380831
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  20380860 ccattgtttttgaccaatgaaaagtgagaa 20380831  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 41957613 - 41957642
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  41957613 ccattgtttttgaccaatgaaaagtgagaa 41957642  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 11767923 - 11767878
Alignment:
Q  43 ttgtaccaaaaattatctaaaatggttgttcaaatatcagtactct 88  Q
    ||||||||||| || |||||||||||||||||||||||| ||||||    
T  11767923 ttgtaccaaaagttgtctaaaatggttgttcaaatatcactactct 11767878  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 21749501 - 21749542
Alignment:
Q  47 accaaaaattatctaaaatggttgttcaaatatcagtactct 88  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  21749501 accaaaaattatataaaatggttgttcaaatatcactactct 21749542  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 1774218 - 1774174
Alignment:
Q  43 ttgtaccaaaaattatctaaaatggttgttcaaatatcagtactc 87  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||    
T  1774218 ttgtaccaaaaattgtctaaaatagttgttcaaatatcactactc 1774174  T

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Target: scaffold0508 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 11507 - 11478
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  11507 ccattgtttttgaccaatgaaaagtgagaa 11478  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1031855 - 1031884
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  1031855 ccattgtttttgaccaatgaaaagtgagaa 1031884  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 31658019 - 31658048
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  31658019 ccattgtttttgaccaatgaaaagtgagaa 31658048  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34974553 - 34974582
Alignment:
Q  1 ccattgtttttgaccaatgaaaagtgagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  34974553 ccattgtttttgaccaatgaaaagtgagaa 34974582  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 41951678 - 41951718
Alignment:
Q  47 accaaaaattatctaaaatggttgttcaaatatcagtactc 87  Q
    |||||||||||| | |||||||||||||||||||| |||||    
T  41951678 accaaaaattatatgaaatggttgttcaaatatcactactc 41951718  T

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