View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_46 (Length: 239)
Name: NF8087_low_46
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_46 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 23284175 - 23283958
Alignment:
| Q |
22 |
aaatattcataaatttgttttgtgtgttattgaacttttgaccaaatgaccacatcctaatacttcatatccactatgcttctaatgtgtaatgtgtagt |
121 |
Q |
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| T |
23284175 |
aaatattcataaatttgttttgtgtgttattgaacttttgaccaaatgaccacatcctaatacttcatatccactatgcttctaatgtgtaatgtgcagt |
23284076 |
T |
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| Q |
122 |
aaacatgtattttgtttacttaacataacacatctttaattcttcatcgtcgcttgccaccaaagacnnnnnnntgaatgaatttgacataataaacgtt |
221 |
Q |
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| T |
23284075 |
aaacatgtattttgtttacttaacataacacatctttaattcttcatcgtcgcttgccaccaaagacaaaaaaatgaatgaatttgacataatagacgtt |
23283976 |
T |
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| Q |
222 |
aaatgaagaaattcacat |
239 |
Q |
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|||| || |||||||||| |
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| T |
23283975 |
aaataaaaaaattcacat |
23283958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 23394359 - 23394572
Alignment:
| Q |
18 |
ggaaaaatattcataaatttgttttgtgtgttattgaacttttgaccaaatgaccacatcctaatacttcatatccactatgcttctaatgtgtaatgtg |
117 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23394359 |
ggaaaaatattcataaatttgttttgtgtgtcattgaacttttcaccaaatcaccacatcctaatacttcatatccaccatgcttctaatgtgtaa---- |
23394454 |
T |
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| Q |
118 |
tagtaaacatgtattttgtttacttaacataacacatctttaattcttcatcgtcgcttgccaccaaagacnnnnnnntgaatgaatttgacataataaa |
217 |
Q |
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| T |
23394455 |
---taaacatgtattttgtttacttaacataacacatctttaattcttcattgtcgcttgccaccaaaaac-aaaaaatgaatgaatttgacataataga |
23394550 |
T |
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| Q |
218 |
cgttaaatgaagaaattcacat |
239 |
Q |
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| T |
23394551 |
ggttaaatgaagaaattcacat |
23394572 |
T |
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