View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_48 (Length: 236)
Name: NF8087_low_48
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 268376 - 268596
Alignment:
| Q |
1 |
caatgccaaggaaattggcttcattaaggtcaatacttctatgtacctttctatttgttagagtagatttctaaatatctgcttgttttagcatgagttc |
100 |
Q |
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| T |
268376 |
caatgccaaggaaattggcttcattaaggtcaatacttctatgtacctttctatttgttagagtagatttctaaatatctgcttgttttagcatgagttc |
268475 |
T |
|
| Q |
101 |
tcatcactttgnnnnnnngnnnnnnnnnggt-cttgcagtatcgctgaaaagtttagagttcttcggagctgcaaaatgttgtcaggatgattttagtta |
199 |
Q |
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| T |
268476 |
tcatcactttgccccccctttttctttttttgcttgcagtatcgctgaaaagtttagagtccttcggagctgcaaaatgttgccaggatgattttagtta |
268575 |
T |
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| Q |
200 |
ttaaagaacttataatgttgt |
220 |
Q |
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||||||||||||||||||||| |
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| T |
268576 |
ttaaagaacttataatgttgt |
268596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 53930238 - 53930281
Alignment:
| Q |
64 |
tagatttctaaatatctgcttgttttagcatgagttctcatcac |
107 |
Q |
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| T |
53930238 |
tagatttctaaatatatgcttgttttagcatgagttctcatcac |
53930281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 34015321 - 34015375
Alignment:
| Q |
167 |
agctgcaaaatgttgtcaggatgattttagttattaaagaacttataatgttgtt |
221 |
Q |
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| T |
34015321 |
agctgcaaaacgatgccaggatgattttagttattgaagaacttataattttgtt |
34015375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 48295589 - 48295560
Alignment:
| Q |
1 |
caatgccaaggaaattggcttcattaaggt |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
48295589 |
caatgccaaggaaattggcttcattaaggt |
48295560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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