View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8087_low_6 (Length: 569)
Name: NF8087_low_6
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8087_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 312 - 547
Target Start/End: Complemental strand, 10002478 - 10002243
Alignment:
| Q |
312 |
taaacatagttagagttttgaaatacaaatgtaaaatcattcatcttttgacatatctttcatatgcagaattaaacaaaaaaccagatgcatgttcaat |
411 |
Q |
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| T |
10002478 |
taaacatagttagtgttttgaaatacaaatgtaagattattcatctttccacgtatctttcatatgcagaattaaacagaaaaccagatgcgtgttcaat |
10002379 |
T |
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| Q |
412 |
ttgtgaggaatatactactgagattcttgattatctaaaggataacaagactcaggcaaagatcattgatgaccttcataatacttgccatcagcttccg |
511 |
Q |
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| T |
10002378 |
ttgtgaggaatatactactgagattcttgattatctaaaggataacaagactcaggcaaagatcattgatgaccttcataatacttgccatcagcttccg |
10002279 |
T |
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| Q |
512 |
gctttcagcgagcaggtttgtctcctttgcttgatt |
547 |
Q |
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| T |
10002278 |
gctttcagcgagcaggtttgtctcctttgcttgatt |
10002243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 10003111 - 10002873
Alignment:
| Q |
21 |
actctctgatgtgtaaattacacatgagaggatccgttcatgtgaggttggggagccaaacagagagactgtttccaatatttaaacctgtcacctcgag |
120 |
Q |
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| T |
10003111 |
actctctgatgcgtaaattacacatgagatgatctgttcatgtgaggttggggagccaaacggagagactgtttccaatatttaaacctgtcacctcgag |
10003012 |
T |
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| Q |
121 |
gttacaaaccaaaaaccttaccattgcgctaatgctcaccc----ttagaaccttgatttaattagtccaaattaaactcggattgatatctgatgtgga |
216 |
Q |
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| T |
10003011 |
gttacaaaccaaaaaccttaccattgtgctaacgctcacccttaattagaaccttgatttaattggtccaaattaagttcggattgatatctgatgtgca |
10002912 |
T |
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| Q |
217 |
aagaatgtttctaagtattgagatatgccattttcatta |
255 |
Q |
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| T |
10002911 |
gcggatgtttctaagtattgagatatgccattttcatta |
10002873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 509
Target Start/End: Original strand, 26993305 - 26993420
Alignment:
| Q |
394 |
accagatgcatgttcaatttgtgaggaatatactactgagattcttgattatctaaaggataacaagactcaggcaaagatcattgatgaccttcataat |
493 |
Q |
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| T |
26993305 |
accagatgtgtgtgcactttgtgaggaatatactaccaaggcacttgattatataaatgaaaacaagactcagagtgagatcattgatattcttcataat |
26993404 |
T |
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| Q |
494 |
acttgccatcagcttc |
509 |
Q |
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| T |
26993405 |
acttgtcaccagcttc |
26993420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 3229118 - 3229150
Alignment:
| Q |
23 |
tctctgatgtgtaaattacacatgagaggatcc |
55 |
Q |
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| T |
3229118 |
tctctcatgtgtaaattacacatgagaggatcc |
3229150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 3238322 - 3238354
Alignment:
| Q |
23 |
tctctgatgtgtaaattacacatgagaggatcc |
55 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
3238322 |
tctctcatgtgtaaattacacatgagaggatcc |
3238354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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