View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8087_low_9 (Length: 530)

Name: NF8087_low_9
Description: NF8087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8087_low_9
NF8087_low_9
[»] chr1 (24 HSPs)
chr1 (14-513)||(47714482-47714980)
chr1 (394-512)||(47721839-47721957)
chr1 (394-512)||(47728831-47728949)
chr1 (25-104)||(19495230-19495309)
chr1 (25-104)||(33168094-33168173)
chr1 (25-117)||(4518206-4518298)
chr1 (25-101)||(5141676-5141751)
chr1 (25-129)||(51666444-51666548)
chr1 (24-94)||(25039894-25039964)
chr1 (153-242)||(47722104-47722192)
chr1 (153-242)||(47729096-47729184)
chr1 (25-104)||(7966173-7966253)
chr1 (25-117)||(8459148-8459240)
chr1 (25-117)||(46979048-46979140)
chr1 (25-104)||(36072553-36072632)
chr1 (31-117)||(13177926-13178012)
chr1 (39-117)||(38690114-38690192)
chr1 (25-117)||(94588-94680)
chr1 (25-117)||(46886178-46886270)
chr1 (37-117)||(50113510-50113590)
chr1 (25-104)||(1655893-1655972)
chr1 (37-115)||(12643411-12643489)
chr1 (25-103)||(31780158-31780236)
chr1 (25-117)||(22527485-22527577)
[»] chr5 (9 HSPs)
chr5 (14-129)||(6267654-6267769)
chr5 (14-129)||(43179678-43179793)
chr5 (25-104)||(33994952-33995031)
chr5 (25-117)||(7796768-7796860)
chr5 (25-104)||(24050217-24050296)
chr5 (25-104)||(24053344-24053423)
chr5 (25-126)||(16440197-16440298)
chr5 (25-117)||(38407337-38407429)
chr5 (25-117)||(34122715-34122807)
[»] chr8 (8 HSPs)
chr8 (16-128)||(22661353-22661465)
chr8 (25-129)||(30972652-30972756)
chr8 (25-117)||(4867593-4867685)
chr8 (37-117)||(43679599-43679679)
chr8 (25-104)||(23578625-23578704)
chr8 (44-117)||(34367121-34367194)
chr8 (25-104)||(43377096-43377175)
chr8 (38-115)||(39661-39738)
[»] chr6 (16 HSPs)
chr6 (25-129)||(20436075-20436179)
chr6 (25-129)||(20439783-20439887)
chr6 (19-123)||(34230664-34230768)
chr6 (25-129)||(20448565-20448669)
chr6 (25-104)||(8304628-8304707)
chr6 (25-117)||(7537377-7537469)
chr6 (30-129)||(19129173-19129269)
chr6 (25-117)||(2051218-2051310)
chr6 (25-104)||(29667636-29667715)
chr6 (25-87)||(2258476-2258538)
chr6 (25-102)||(18610038-18610115)
chr6 (25-104)||(23959081-23959160)
chr6 (37-117)||(29286405-29286485)
chr6 (44-117)||(3502454-3502527)
chr6 (28-117)||(28362521-28362610)
chr6 (44-104)||(25140909-25140969)
[»] chr4 (11 HSPs)
chr4 (14-117)||(6186826-6186931)
chr4 (22-100)||(30043239-30043317)
chr4 (25-117)||(18578813-18578905)
chr4 (25-117)||(44050883-44050975)
chr4 (25-117)||(38460616-38460708)
chr4 (43-117)||(51642215-51642289)
chr4 (25-117)||(37395007-37395099)
chr4 (25-104)||(4774417-4774496)
chr4 (25-103)||(10423212-10423289)
chr4 (37-117)||(10374242-10374322)
chr4 (25-117)||(44674328-44674420)
[»] chr7 (7 HSPs)
chr7 (25-117)||(12111406-12111498)
chr7 (25-104)||(10705438-10705517)
chr7 (25-117)||(34742186-34742278)
chr7 (42-117)||(19044500-19044575)
chr7 (42-117)||(20710061-20710136)
chr7 (25-117)||(17838425-17838517)
chr7 (25-117)||(34622689-34622781)
[»] chr3 (9 HSPs)
chr3 (25-117)||(6489519-6489611)
chr3 (44-117)||(21952009-21952082)
chr3 (25-129)||(42166190-42166294)
chr3 (25-117)||(600334-600426)
chr3 (25-104)||(67064-67143)
chr3 (25-117)||(7841286-7841378)
chr3 (25-117)||(36134073-36134165)
chr3 (25-117)||(50213648-50213740)
chr3 (28-117)||(48246605-48246694)
[»] scaffold0219 (1 HSPs)
scaffold0219 (25-117)||(19901-19993)
[»] chr2 (19 HSPs)
chr2 (25-117)||(9659846-9659938)
chr2 (25-117)||(24601830-24601922)
chr2 (25-117)||(24612192-24612284)
chr2 (25-117)||(28342713-28342805)
chr2 (25-117)||(41052812-41052904)
chr2 (25-117)||(43943882-43943974)
chr2 (25-104)||(12905710-12905789)
chr2 (25-104)||(45479624-45479703)
chr2 (25-117)||(25184621-25184713)
chr2 (25-117)||(41181601-41181693)
chr2 (33-127)||(43668320-43668414)
chr2 (36-104)||(3206949-3207017)
chr2 (25-117)||(10825409-10825501)
chr2 (25-117)||(39950961-39951053)
chr2 (42-117)||(82054-82128)
chr2 (25-117)||(439614-439704)
chr2 (25-129)||(25613394-25613497)
chr2 (25-117)||(32952921-32953013)
chr2 (25-117)||(41004717-41004809)
[»] scaffold0199 (1 HSPs)
scaffold0199 (25-117)||(12594-12686)
[»] scaffold0011 (1 HSPs)
scaffold0011 (37-117)||(236026-236106)


Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 14 - 513
Target Start/End: Complemental strand, 47714980 - 47714482
Alignment:
Q  14 aatattagtcgtacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47714980 aatattagtcgtacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacatttcattaaaat 47714881  T
Q  114 tacattaatgtttgaacacaagtgtgaacatcaattttcccttttttatatgctagaatgttgagttccattaagtatgactcatatatacaaatgtaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47714880 tacattaatgtttgaacacaagtgtgaacatcaattttcccttttttatatgctagaatgttgagttccattaagtatgactcatatatacaaatgtaag 47714781  T
Q  214 tggggcaaagggcagggcagctgggctatagtggatcattgtgaatttggatatagtcatgtgtatgtttatacatataaccatactttttcataaagga 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47714780 tggggcaaagggcagggcagctgggctatagtggatcattgtgaatttggatatagtcctgtgtatgtttatacatataaccatactttttcataaagga 47714681  T
Q  314 gtattttagcaaccaacacctttttttggacaaaaaacttaattttactcttttnnnnnnnnnnnnnnnnnnnnnnntagagttgtaattttggacaagt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||                       |||||||||||||||||||||||    
T  47714680 gtattttagcaaccaacacctttttttggacaaaaaacttaattttactc-ttttaaaaaaaatcaaaattgaaaaatagagttgtaattttggacaagt 47714582  T
Q  414 cattatcaaacaaaatgtaattaaatgagtctttttatcgaaaagaaaatgtgtaaattgctaaaatagatattcataaaatagttagtctattctagct 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47714581 cattatcaaacaaaatgtaattaaatgagtctttttatcgaaaagaaaatgtgtaaattgctaaaatagatattcataaaatagttagtctattctagct 47714482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 394 - 512
Target Start/End: Complemental strand, 47721957 - 47721839
Alignment:
Q  394 agttgtaattttggacaagtcattatcaaacaaaatgtaattaaatgagtctttttatcgaaaagaaaatgtgtaaattgctaaaatagatattcataaa 493  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |  ||||||||    
T  47721957 agttgtaattttcgacaaggcattatcaaacaaaatgtaattaaatgggtctttttatccaaaagaaaatgtgtaaattgctaaaataaaccttcataaa 47721858  T
Q  494 atagttagtctattctagc 512  Q
    |||||||||||||| ||||    
T  47721857 atagttagtctattttagc 47721839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 394 - 512
Target Start/End: Complemental strand, 47728949 - 47728831
Alignment:
Q  394 agttgtaattttggacaagtcattatcaaacaaaatgtaattaaatgagtctttttatcgaaaagaaaatgtgtaaattgctaaaatagatattcataaa 493  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |  ||||||||    
T  47728949 agttgtaattttcgacaaggcattatcaaacaaaatgtaattaaatgggtctttttatccaaaagaaaatgtgtaaattgctaaaataaaccttcataaa 47728850  T
Q  494 atagttagtctattctagc 512  Q
    |||||||||||||| ||||    
T  47728849 atagttagtctattttagc 47728831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 19495230 - 19495309
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| ||||||||||||| || ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  19495230 tacaacatttaaactcagtcataaataagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 19495309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 33168094 - 33168173
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    |||||||| | |||||||||||||||||  |||||| ||||||||||| || ||||||||||| |||||| |||||||||    
T  33168094 tacaacatctgtactcagtcataaacaaggaaaatatattatcttttacagttgtccataattaaatcaaaccgacattt 33168173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 4518298 - 4518206
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  4518298 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 4518206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 5141751 - 5141676
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgaca 101  Q
    |||||||||||||||||| ||||||||| |||| |||| ||||||||| || ||||||||||| |||||| ||||||    
T  5141751 tacaacatttatactcaggcataaacaagaaaattaca-tatcttttacagttgtccataattaaatcaaaccgaca 5141676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 51666548 - 51666444
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 124  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||| ||||| |  ||||||||||| |||||| |||||||||  || ||||||||| || ||    
T  51666548 tacaacattgaaactcggtcataaacaagaaaaatacaatatattttacaattgtccataattaaatcaaaccgacatttggttcaaattacataaaagt 51666449  T
Q  125 ttgaa 129  Q
    |||||    
T  51666448 ttgaa 51666444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 25039964 - 25039894
Alignment:
Q  24 gtacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaa 94  Q
    |||||||||||| ||||||||||||||||  |||||||| ||||||||| |  ||||||||||| ||||||    
T  25039964 gtacaacatttaaactcagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaa 25039894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 47722192 - 47722104
Alignment:
Q  153 ccttttttatatgctagaatgttgagttccattaagtatgactcatatatacaaatgtaagtggggcaaagggcagggcagctgggctat 242  Q
    ||||||||||||| ||||||||||||||||||  |||| |||||||||||| | | ||||| |||| ||| ||||||| |||||| ||||    
T  47722192 ccttttttatatgttagaatgttgagttccatggagtaggactcatatatagacacgtaagagggggaaa-ggcagggtagctggactat 47722104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 47729184 - 47729096
Alignment:
Q  153 ccttttttatatgctagaatgttgagttccattaagtatgactcatatatacaaatgtaagtggggcaaagggcagggcagctgggctat 242  Q
    ||||||||||||| ||||||||||||||||||  |||| |||||||||||| | | ||||| |||| ||| ||||||| |||||| ||||    
T  47729184 ccttttttatatgttagaatgttgagttccatggagtaggactcatatatagacacgtaagagggggaaa-ggcagggtagctggactat 47729096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 7966173 - 7966253
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatc-ttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| ||||||||||||||||  |||||||| |||| ||||| |  ||||||||||| |||||| |||||||||    
T  7966173 tacaacatttaaactcagtcataaacaagtaaaatacaatatctttttacaattgtccataattaaatcaaaccgacattt 7966253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 8459148 - 8459240
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||  ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  8459148 tacaacattgaaacttggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 8459240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 46979140 - 46979048
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||| | ||||||||| |  ||||||||||| |||||| | ||||||| ||| ||||||||    
T  46979140 tacaacattgaaactcggtcataaacaagaaaaatagaatatcttttacaattgtccataattaaatcaaacagacatttgattcaaattaca 46979048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 36072553 - 36072632
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||| ||| ||||||||||||||||  |||||||| ||||||||| |  ||| ||||||| |||||| |||||||||    
T  36072553 tacaacagttaaactcagtcataaacaagtaaaatacaatatcttttacaattgttcataattaaatcaaaccgacattt 36072632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 13178012 - 13177926
Alignment:
Q  31 atttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||| ||||||||||||||||  |||||| | ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  13178012 atttaaactcagtcataaacaagtaaaatataatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 13177926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 38690114 - 38690192
Alignment:
Q  39 tcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||||| || ||||||||| ||||||||| |  |||||||| || |||||| ||||||||| ||| ||||||||    
T  38690114 tcagtcataaataagaaaaatacaatatcttttacaattgtccatagttaaatcaaaccgacatttgattcaaattaca 38690192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 94588 - 94680
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  94588 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 94680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 46886270 - 46886178
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  |||||||||||    
T  46886270 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttaaaattaca 46886178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 50113510 - 50113590
Alignment:
Q  37 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    |||||| ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  |||||||||||    
T  50113510 actcagacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttaaaattaca 50113590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 1655972 - 1655893
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| | | ||||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| | |||||||    
T  1655972 tacaacatttaaatttagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaacggacattt 1655893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 12643411 - 12643489
Alignment:
Q  37 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaatta 115  Q
    |||||| ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  |||||||||    
T  12643411 actcagacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttaaaatta 12643489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 31780158 - 31780236
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacatt 103  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| ||||||||    
T  31780158 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatt 31780236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 22527577 - 22527485
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||| ||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  22527577 tacaacattgaaactcggacataaacaagataaatacaatatgttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 22527485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 6267654 - 6267769
Alignment:
Q  14 aatattagtcgtacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaat 113  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||  | | ||||||||| |||||||||||||||| ||||||||    
T  6267654 aatactagtcgtacaacatttatcctcagtcataaacaagaaaaatacattatcttttaccgttatccataattaaatcaatccgacatttcattaaaat 6267753  T
Q  114 tacattaatgtttgaa 129  Q
    | ||  ||||||||||    
T  6267754 tgcaagaatgtttgaa 6267769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 43179793 - 43179678
Alignment:
Q  14 aatattagtcgtacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaat 113  Q
    |||| |||||||||||||||||||||| |||| |||||| ||||||| ||||||||||| |  ||||||||||| |  |||||| ||||||  |||||||    
T  43179793 aatactagtcgtacaacatttatactcggtcaaaaacaagaaaaatatattatcttttacacttgtccataattaatacaatccaacatttcgttaaaat 43179694  T
Q  114 tacattaatgtttgaa 129  Q
    ||||  ||||||||||    
T  43179693 tacacgaatgtttgaa 43179678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 33995031 - 33994952
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  33995031 tacaacatttaaactcagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 33994952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 7796768 - 7796860
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| || |||||||| ||||||||| |||||||||||  ||||||||||| |||||| |||||||||  || ||||||||    
T  7796768 tacaacattgaaactcggttataaacaagaaaaatacaatatcttttataattgtccataattaaatcaaaccgacatttggttcaaattaca 7796860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 24050217 - 24050296
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| | ||||||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  24050217 tacaacatttaaattcagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 24050296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 24053344 - 24053423
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||||| |  |||||||||||  ||||| |||||||||    
T  24053344 tacaacatttaaactcagtcataaacaagtaaaatacaatatcttttacaattgtccataattacatcaaaccgacattt 24053423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 16440298 - 16440197
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 124  Q
    |||| |||||||| |||||||||||||| || ||||||| || ||||| |  || |||||||| ||||||||||| ||||  |||||||||||  |||||    
T  16440298 tacaccatttataatcagtcataaacaagaacaatacataatattttagaattgaccataattaaatcaatccgatatttcgttaaaattacacgaatgt 16440199  T
Q  125 tt 126  Q
    ||    
T  16440198 tt 16440197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 38407337 - 38407429
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||||| ||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| ||| |||||  || ||||||||    
T  38407337 tacaacattgaaactcagacataaacaagaaaaatacaatatcttttagaattgtccataattaaatcaaaccggcatttggttcaaattaca 38407429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 34122715 - 34122807
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  || ||||||||    
T  34122715 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttcaaattaca 34122807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 22661465 - 22661353
Alignment:
Q  16 tattagtcgtacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaatta 115  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||  | ||||||||||| |||||| |||| ||||  |||||||||    
T  22661465 tattagttgtacaacatttatactcagtcataaacaagaaaaatacattatcttttacggttgtccataattaaatcaaaccgatatttcgttaaaatta 22661366  T
Q  116 cattaatgtttga 128  Q
    ||  |||||||||    
T  22661365 cacgaatgtttga 22661353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 30972756 - 30972652
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 124  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||  | |||| |||||| ||||||| | ||||||  |||||||||||  |||||    
T  30972756 tacatcatttatactcagtcataaacaagaaaaatacattatcttttacggttgtcgataattaaatcaattcaacatttcgttaaaattacacgaatgt 30972657  T
Q  125 ttgaa 129  Q
    |||||    
T  30972656 ttgaa 30972652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 4867685 - 4867593
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||| |    ||||||||||| |||||| || |||||| ||| ||| ||||    
T  4867685 tacaacatttaaactcagtcataaacaagaaaaatacaatatctttcaccattgtccataattaaatcaaaccaacatttgatttaaaataca 4867593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 43679599 - 43679679
Alignment:
Q  37 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  43679599 actcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 43679679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 23578625 - 23578704
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||| ||||||| |||||| |||||||||    
T  23578625 tacaacattgaaactctgtcataaacaagaaaaatacaatatcttttacaattgttcataattaaatcaaaccgacattt 23578704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 34367121 - 34367194
Alignment:
Q  44 cataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||| || ||||||||    
T  34367121 cataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacattttgttcaaattaca 34367194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 43377175 - 43377096
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| ||| || |||| ||||    
T  43377175 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatgaaaccgaaattt 43377096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 39661 - 39738
Alignment:
Q  38 ctcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaatta 115  Q
    ||||| ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  |||||||||    
T  39661 ctcagacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttaaaatta 39738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 20436179 - 20436075
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 124  Q
    |||| |||||||||| |||||||||||| |  |||||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||| |||||    
T  20436179 tacaccatttatacttagtcataaacaagaggaatacattatcttttacagttgtccatgattaaatcaatccgacattttattaaaattacatgaatgt 20436080  T
Q  125 ttgaa 129  Q
    |||||    
T  20436079 ttgaa 20436075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 20439887 - 20439783
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 124  Q
    |||| |||||||||| |||||||||||| |  |||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||  |||||    
T  20439887 tacaccatttatacttagtcataaacaagaggaatacattatcttttacagttgtccataattaaatcaatccgacattttgttaaaattacaggaatgt 20439788  T
Q  125 ttgaa 129  Q
    |||||    
T  20439787 ttgaa 20439783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 34230664 - 34230768
Alignment:
Q  19 tagtcgtacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacat 118  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |  |||| |||||| |||||| |||||||||  ||||||||||||    
T  34230664 tagtcgtacaacatttatactcagtcataaagaataaaaatacattatcttttacaattgtctataattaaatcaaaccgacatttcgttaaaattacat 34230763  T
Q  119 taatg 123  Q
     ||||    
T  34230764 gaatg 34230768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 20448669 - 20448565
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 124  Q
    |||| |||||||||| |||||||||||| || |||||||||||||||| || ||||||||||| ||||||||||||||||  ||||||||| |  |||||    
T  20448669 tacaccatttatacttagtcataaacaagaagaatacattatcttttacagttgtccataattaaatcaatccgacatttcgttaaaattagaggaatgt 20448570  T
Q  125 ttgaa 129  Q
    |||||    
T  20448569 ttgaa 20448565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 8304628 - 8304707
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||| |  ||||||||||| |||||| |||||||||    
T  8304628 tacaacatttgcactcagtcataaacaagaaaaatacattatcttttacaattgtccataattaaatcaaaccgacattt 8304707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 7537377 - 7537469
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  |||||||||||    
T  7537377 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttaaaattaca 7537469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 19129173 - 19129269
Alignment:
Q  30 catttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgtttgaa 129  Q
    ||||||||||||||||||||||| ||   | |||||||||||| || ||||||||||| |||||||| |||||||  || ||||||||  ||||||||||    
T  19129173 catttatactcagtcataaacaagaa---tgcattatcttttacagttgtccataattaaatcaatctgacatttcgttgaaattacacgaatgtttgaa 19129269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 2051218 - 2051310
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | ||||  |||||| ||| ||||||||| ||||||||| || ||||||||||| |||||| |||||||||| || ||||||||    
T  2051218 tacaacattgaaactcgatcataaccaagaaaaatacaatatcttttacagttgtccataattaaatcaaaccgacattttgttcaaattaca 2051310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 29667715 - 29667636
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    |||||| |||| ||||||||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  29667715 tacaacttttaaactcagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 29667636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 2258476 - 2258538
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataatt 87  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||||| |  |||||||||||    
T  2258476 tacaacatttaaactcagtcataaacaagaaaaatacaatatcttttacaattgtccataatt 2258538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 18610115 - 18610038
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacat 102  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||    
T  18610115 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacat 18610038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 23959081 - 23959160
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| ||||||||||||||||  |||||||| ||| ||||| |  ||| ||||||| |||||| |||||||||    
T  23959081 tacaacatttaaactcagtcataaacaagtaaaatacaatattttttacaattgttcataattaaatcaaaccgacattt 23959160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 29286405 - 29286485
Alignment:
Q  37 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    |||| ||| ||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  29286405 actcggtcttaaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 29286485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 3502527 - 3502454
Alignment:
Q  44 cataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  3502527 cataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 3502454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 28362610 - 28362521
Alignment:
Q  28 aacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    |||||| | |||| ||||||||||| ||||||||| ||||||||| || |||| | |||| ||| || |||||||||  || ||||||||    
T  28362610 aacattgaaactcggtcataaacaagaaaaatacaatatcttttacagttgtctaaaattaaattaaaccgacatttggttcaaattaca 28362521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 25140969 - 25140909
Alignment:
Q  44 cataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||| ||||||||| |||| |||| |  ||||||||||| |||||| |||||||||    
T  25140969 cataaacaagaaaaatacaatatcatttacaattgtccataattaaatcaaaccgacattt 25140909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 6186826 - 6186931
Alignment:
Q  14 aatattagtcgtacaacatttatactcagtcata--aacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaa 111  Q
    |||| |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||  ||| |||||| ||||||||||||||||  |||||    
T  6186826 aatactagtcgtacaacatttatactcagtcatataaacaagaaaaatacattatcttttatagtagtcaataattaaatcaatccgacatttcgttaaa 6186925  T
Q  112 attaca 117  Q
    ||||||    
T  6186926 attaca 6186931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 30043317 - 30043239
Alignment:
Q  22 tcgtacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgac 100  Q
    |||||||||||||||||| |||||||||||| ||||||  ||||||||||| |  | ||||||||| ||||||||||||    
T  30043317 tcgtacaacatttatactaagtcataaacaagaaaaatgtattatcttttacaattatccataattaaatcaatccgac 30043239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 18578813 - 18578905
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||||| ||||| ||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| ||||||||| ||| ||| ||||    
T  18578813 tacaacatttaaactcactcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttgattcaaaataca 18578905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 44050975 - 44050883
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  44050975 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 44050883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 38460616 - 38460708
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||| | ||||||||| |  ||||||||||| ||| || ||||||||| ||| ||||||||    
T  38460616 tacaacattgaaactcggtcataaacaagaaaaatataatatcttttacaattgtccataattaaattaaaccgacatttgattcaaattaca 38460708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 51642215 - 51642289
Alignment:
Q  43 tcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    |||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  51642215 tcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 51642289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 37395099 - 37395007
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| ||| || ||||||||| ||| ||||||||    
T  37395099 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaattaaaccgacatttgattcaaattaca 37395007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 4774496 - 4774417
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| |||||||||||| |||  |||||||| |||| |||| |  ||||||||||| ||||||  ||||||||    
T  4774496 tacaacatttaaactcagtcataagcaagtaaaatacaatatcatttacaattgtccataattaaatcaaatcgacattt 4774417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 10423289 - 10423212
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacatt 103  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| ||| || ||||||||    
T  10423289 tacaacattgaaactcggtcataaacaagaaaaataca-tatcttttacaattgtccataattaaattaaaccgacatt 10423212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 10374242 - 10374322
Alignment:
Q  37 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    |||| ||||||| ||| ||||||||| || |||||| || ||||||||||| ||| || |||||||||  || ||||||||    
T  10374242 actcggtcataaccaagaaaaatacaataccttttacagttgtccataattaaatgaaaccgacatttggttcaaattaca 10374322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 44674328 - 44674420
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| | || |||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  44674328 tacaacattgaaactcggacataaacaagataagtacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 44674420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 12111406 - 12111498
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| |||||||||||  ||||||||||| |||||| |||||||||  || ||||||||    
T  12111406 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttataattgtccataattaaatcaaaccgacatttggttcaaattaca 12111498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 10705438 - 10705517
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  10705438 tacaacatttaaactcagtcataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 10705517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 34742278 - 34742186
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| ||||||||| ||||||||| |  ||||||||||| ||||||  |||||||| ||| ||||||||    
T  34742278 tacaacattgaaactcggacataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaatcgacatttgattcaaattaca 34742186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 19044500 - 19044575
Alignment:
Q  42 gtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||| ||| ||||||||| ||||||||| || ||||||||||| |||||| |||||||||  || ||||||||    
T  19044500 gtcataaccaagaaaaatacaatatcttttacagttgtccataattaaatcaaaccgacatttggttcaaattaca 19044575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 20710136 - 20710061
Alignment:
Q  42 gtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||| ||| ||||||||| ||||||||| || ||||||||||| |||||| |||||||||  || ||||||||    
T  20710136 gtcataaccaagaaaaatacaatatcttttacagttgtccataattaaatcaaaccgacatttggttcaaattaca 20710061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 17838517 - 17838425
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  17838517 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 17838425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 34622689 - 34622781
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| |||||||| || ||||||||| ||| ||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  34622689 tacaacattgaaactcggtcataaataagaaaaatacaatatattttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 34622781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 6489519 - 6489611
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||||||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  6489519 tacaacattgaaactcggtcataaacaagaaaaatacattatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 6489611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 21952009 - 21952082
Alignment:
Q  44 cataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| ||||||||| ||||||||||||    
T  21952009 cataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttgattaaaattaca 21952082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 42166294 - 42166190
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 124  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || |||||||| ||||||    
T  42166294 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattacactaatgt 42166195  T
Q  125 ttgaa 129  Q
    |||||    
T  42166194 ttgaa 42166190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 600426 - 600334
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  600426 tacaacattgaaactcggacataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 600334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 67064 - 67143
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| ||||| | ||||||||  |||||||| ||||||||| |  ||||||||||| |||||| |||||||||    
T  67064 tacaacatttaaactcacttataaacaagtaaaatacaatatcttttacaattgtccataattaaatcaaaccgacattt 67143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 7841286 - 7841378
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||||| ||||||||| | ||||||| ||||||||| |  ||||||||| | ||| || |||||||||  |||||||||||    
T  7841286 tacaacattgaaactcagacataaacaagataaatacagtatcttttacaattgtccataagtaaattaaaccgacatttggttaaaattaca 7841378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 36134165 - 36134073
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  36134165 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 36134073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 50213648 - 50213740
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| |||||| || ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  50213648 tacaacattgaaactcggacataaacaagaaaaatgcaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 50213740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 48246605 - 48246694
Alignment:
Q  28 aacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    |||||| | |||||| ||||| ||| | ||||||| ||||||||| |  ||||||||||| ||| || |||||||||  |||||||||||    
T  48246605 aacattgaaactcagacataagcaatataaatacaatatcttttacaattgtccataattaaattaaaccgacatttggttaaaattaca 48246694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 19993 - 19901
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  19993 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 19901  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 9659938 - 9659846
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| ||||||  ||||||||  |||||||||||    
T  9659938 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaacgacatttggttaaaattaca 9659846  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 24601830 - 24601922
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  24601830 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 24601922  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 24612284 - 24612192
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  24612284 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 24612192  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 28342713 - 28342805
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  28342713 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 28342805  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 41052812 - 41052904
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  41052812 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 41052904  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 43943882 - 43943974
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  43943882 tacaacattaaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 43943974  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 12905710 - 12905789
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| ||||||||||||||||  |||||||| ||| ||||| |  ||||||||||| |||||| |||||||||    
T  12905710 tacaacatttaaactcagtcataaacaagtaaaatacaatatattttacaattgtccataattaaatcaaaccgacattt 12905789  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 45479703 - 45479624
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||||| |  ||| ||||||| |||||| |||||||||    
T  45479703 tacaacatttaaactcagtcataaacaagtaaaatacaatatcttttacaattgttcataattaaatcaaaccgacattt 45479624  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 25184713 - 25184621
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||||| ||||||||| |  ||||||||||| |||||| |||| ||||  || ||||||||    
T  25184713 tacaacattgaaactcggtcataaacaagaaaaatacaatatcttttacaattgtccataattaaatcaaaccgatatttggttcaaattaca 25184621  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 41181601 - 41181693
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| |||||||  || ||||||||| ||||||||| || ||||||||||| |||||| |||||||||  || ||||||||    
T  41181601 tacaacattgaaactcggtcataactaagaaaaatacaatatcttttacagttgtccataattaaatcaaaccgacatttggttcaaattaca 41181693  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 43668320 - 43668414
Alignment:
Q  33 ttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgtttg 127  Q
    ||||| |||||||||||||| || ||||||| |||||| | | ||| ||| |||| |||||||| || |||| ||||||||||||  ||||||||    
T  43668320 ttataatcagtcataaacaagaacaatacataatctttcacaactgaccaaaattaaatcaatctgatatttcattaaaattacacaaatgtttg 43668414  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 3206949 - 3207017
Alignment:
Q  36 tactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattt 104  Q
    |||||| |||||||||| ||| ||||||||||||||| |  |||| |||||| |||||| |||||||||    
T  3206949 tactcaatcataaacaagaaagatacattatcttttacaattgtctataattaaatcaaaccgacattt 3207017  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 10825409 - 10825501
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||||| ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| | |||||||  || ||||||||    
T  10825409 tacaacattgaaactcagacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaacagacatttggttcaaattaca 10825501  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 39951053 - 39950961
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  39951053 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 39950961  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 82128 - 82054
Alignment:
Q  42 gtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||||| ||||||||| ||||||||| |  ||||||| ||| |||||| ||||||||| ||| ||||||||    
T  82128 gtcataaacaagaaaaatacaatatcttttacaattgtccat-attaaatcaaaccgacatttgattcaaattaca 82054  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 439704 - 439614
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| |||  |||| ||||||||| |  ||||||||||| |||||| |||||||||  || ||||||||    
T  439704 tacaacattgaaactcggtcataaacaagaaa--tacaatatcttttacaattgtccataattaaatcaaaccgacatttggttcaaattaca 439614  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 25613394 - 25613497
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattacattaatgt 124  Q
    |||| |||||| | ||||||||||||||  ||||||||| |||||||| |  || ||| |||| |||||||| | |||||| || ||||||||  |||||    
T  25613394 tacatcatttaaaatcagtcataaacaa-gaaaatacataatcttttacaattgaccaaaattaaatcaatcaggcattttgtttaaattacaagaatgt 25613492  T
Q  125 ttgaa 129  Q
    |||||    
T  25613493 ttgaa 25613497  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 32952921 - 32953013
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||||| ||| ||||| ||||||||| ||| ||||| |  ||||||||||| ||| || |||||||||  || ||||||||    
T  32952921 tacaacattgaaactcagacatcaacaagaaaaatacaatattttttacaattgtccataattaaattaaaccgacatttggttcaaattaca 32953013  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 41004717 - 41004809
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| ||||||||||| ||||||| | ||||||||| |  |||| |||||| |||||| || ||||||  || ||||||||    
T  41004717 tacaacattgaaactcggtcataaacaagaaaaatataatatcttttacaattgtctataattaaatcaaaccaacatttggtttaaattaca 41004809  T

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Target: scaffold0199 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 12594 - 12686
Alignment:
Q  25 tacaacatttatactcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    ||||||||| | |||| | ||||||||| | ||||||| ||||||||| |  ||||||||||| |||||| |||||||||| || ||||||||    
T  12594 tacaacattgaaactcggacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaaccgacattttgtttaaattaca 12686  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 236106 - 236026
Alignment:
Q  37 actcagtcataaacaacaaaaatacattatcttttatagctgtccataattgaatcaatccgacattttattaaaattaca 117  Q
    |||||| ||||||||| | ||||||| ||||||||| |  ||||||||||| ||||||  ||||||||  || ||||||||    
T  236106 actcagacataaacaagataaatacaatatcttttacaattgtccataattaaatcaaatcgacatttggttcaaattaca 236026  T

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