View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_high_3 (Length: 439)
Name: NF8088_high_3
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 53053947 - 53053528
Alignment:
| Q |
1 |
taccaaattgacaacatccctagttgcgagagcgagaatatcagcacaagagactttgtttcggcatttaggatccctatcaactgctgccttggcctta |
100 |
Q |
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| T |
53053947 |
taccaaattgacaacatccctagttgcgagagcgagaatatcagcacaagagactttgtttcggcatttaggatccctatcaactgctgccttggcctta |
53053848 |
T |
|
| Q |
101 |
accaccgtgtcaaaaccgtcaccagctagtgatatatcatcaggatgttccctctctgccttcggagttgcaagcaaaatcgaagcatcacaaccctata |
200 |
Q |
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| T |
53053847 |
accaccgtgtcaaaaccatcaccagctagtgatatatcatcaggatgttccctctctgccttcggagttgcaagcaaaatcgaagcatcacaaccctgta |
53053748 |
T |
|
| Q |
201 |
aaagcaagtatctatttagcatataaacatgcacaaatttctcattagagtttaattaataagaaaataatgaaatgagaagtaaattacacacataccc |
300 |
Q |
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| T |
53053747 |
aaagcaagtatctatttagcatataaacatgcacaaatttctcattaatgtttaattaataagaaaataatgaaatgagaagtaaattacagacataccc |
53053648 |
T |
|
| Q |
301 |
taacaaaacaatcatggaagaaaagtctaagagtggcaggagcagtgacaaatgtttgttgaaacttctgattcacggcagaacgaaccaattgttcgac |
400 |
Q |
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| T |
53053647 |
tgacaaaacaatcatggaagaaaagtctaagagtggcaggagcagtgacaaatgtttgttgaaacttctgattcacggcagaacgaaccaattgttcgac |
53053548 |
T |
|
| Q |
401 |
attggggcatacattgttat |
420 |
Q |
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| T |
53053547 |
attggggcatacattgttat |
53053528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 1493337 - 1493276
Alignment:
| Q |
302 |
aacaaaacaatcatggaagaaaagtctaagagtggcaggagcagtgacaaatgtttgttgaa |
363 |
Q |
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| T |
1493337 |
aacaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaacaaatgtttgctgaa |
1493276 |
T |
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