View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_high_6 (Length: 393)
Name: NF8088_high_6
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 186 - 362
Target Start/End: Complemental strand, 50984091 - 50983915
Alignment:
| Q |
186 |
gaatctaaagggaatggaacaaaaaggaacatttcccccttacccttatattttttatgctttcatttctttattaaaaggcaaaatggaataaacaaag |
285 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50984091 |
gaatctaaagggaatggaacaaaacggaacatttcccccttacccttatattttttatgctttcatttctttattaaaaggcaaaatggaataaataaag |
50983992 |
T |
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| Q |
286 |
cacacaatcaagaacaaaatatgcagggaaaacgaagtcaaacatgacacaaaacaaaatcacttgcagatattcat |
362 |
Q |
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| T |
50983991 |
cacacaatcaagaacaaaatatacagggaaaacgaagtcaaacatgacacaaaacaaaatcacttgcagatattcat |
50983915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 186 - 362
Target Start/End: Complemental strand, 51087225 - 51087049
Alignment:
| Q |
186 |
gaatctaaagggaatggaacaaaaaggaacatttcccccttacccttatattttttatgctttcatttctttattaaaaggcaaaatggaataaacaaag |
285 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51087225 |
gaatctaaagggaatggaacaaaacggaacatttcccccttacccttatattttttatgctttcatttctttattaaaaggcaaaatggaataaataaag |
51087126 |
T |
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| Q |
286 |
cacacaatcaagaacaaaatatgcagggaaaacgaagtcaaacatgacacaaaacaaaatcacttgcagatattcat |
362 |
Q |
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| T |
51087125 |
cacacaatcaagaacaaaatatacagggaaaacgaagtcaaacatgacacaaaacaaaatcacttgcagatattcat |
51087049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 50984291 - 50984123
Alignment:
| Q |
20 |
gatactagcagcagcagcaattaaaatcagatataaatggggagttagacaatttgcttttgtcaggtagtatatatatggatgtaggagccctcgaata |
119 |
Q |
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| T |
50984291 |
gatactagcagcagcagccattaaaatctgatataaatggggagttagacaatttgcttttgtcaggtagtatatatatggatgtaggagccctcgaata |
50984192 |
T |
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| Q |
120 |
ccaattatgtacaagctcatcatttgtaatgtcttctgtacattcaaaaaatatctataaatactggaa |
188 |
Q |
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| T |
50984191 |
ccaattatgtacaagctcatcatttgtaatgtcttctgtacattcaaaaaatatctataaatactggaa |
50984123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 51087425 - 51087257
Alignment:
| Q |
20 |
gatactagcagcagcagcaattaaaatcagatataaatggggagttagacaatttgcttttgtcaggtagtatatatatggatgtaggagccctcgaata |
119 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51087425 |
gatactagcagcagcagccattaaaatctgatataaatggggagttagacaatttgcttttgtcaggtagtatatatatggatgtaggagccctcgaata |
51087326 |
T |
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| Q |
120 |
ccaattatgtacaagctcatcatttgtaatgtcttctgtacattcaaaaaatatctataaatactggaa |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51087325 |
ccaattatgtacaagctcatcatttgtaatgtcttctgtacattcaaaaaatatctataaatactggaa |
51087257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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