View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_high_7 (Length: 365)
Name: NF8088_high_7
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 38175561 - 38175210
Alignment:
| Q |
19 |
aaaacgacccaacacaagcccaacaagtgcaattccaaataaaatcatgtaatctgaattccctactctcttcacttcactagtcactctcatgtcttct |
118 |
Q |
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| T |
38175561 |
aaaacgacccaacacaagcccaacaagtgcaattccaaataaaatcatgtaatctgaattccctactctcttcacttcactagtcactctcatgtcttct |
38175462 |
T |
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| Q |
119 |
ggtttaacattgaccaacagtggtgatttgcttccactatctaccactaccacctcctcttttaattcaaaatctt------------------tttcct |
200 |
Q |
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||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
38175461 |
ggtttaacattgagcaacagcggtgatttacttccactatctaccactactacctcctcttttaattcaaaatctttttcaactttgcattctttttcct |
38175362 |
T |
|
| Q |
201 |
cttttcttgaagaacgttgaaacttttgacccaaaagtttcttcaacatagatttaaacttaacactattgttaactttattttcatgtaaagaaacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38175361 |
cttttcttgaagaacgttgaaacttttgacccaaaagtttcttcaacatagatttaaacttaacactattgttaactttattttcatgtaaagaaacttt |
38175262 |
T |
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| Q |
301 |
ttcagaacaatccaatttcttatcttccttgacacaatctaatttaacacca |
352 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38175261 |
tccagaacaatccaatttcttatcttccttgacacaatctaatttaacacca |
38175210 |
T |
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