View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8088_low_1 (Length: 943)
Name: NF8088_low_1
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 787; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 6 - 927
Target Start/End: Complemental strand, 4236866 - 4235936
Alignment:
| Q |
6 |
ggagtagcagagatggtactaagaatgtgctcaaaataccatgatcgttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagga |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4236866 |
ggagcagcagagatggtactaagaatgtgttcaaaataccatgatggttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagga |
4236767 |
T |
|
| Q |
106 |
ttattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236766 |
ttattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagat |
4236667 |
T |
|
| Q |
206 |
ggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacggcagtggaagcttgccaacatgct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4236666 |
ggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacgacagtggaagcttgccaacatgct |
4236567 |
T |
|
| Q |
306 |
ggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttatcgataacttgataatataaaattctctatttatacatacgagtctatatga |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4236566 |
ggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttatcgataacttgataatataaaattctctatttatacatacgagcctatatgg |
4236467 |
T |
|
| Q |
406 |
atacgaagaagataataagaata---------actaattcttaattgactattaactaactttatctctgatgacaggtgataatgttttcactgcaaaa |
496 |
Q |
| |
|
| | || ||| |||||||||||| |||| || |||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
4236466 |
aaatgatgaatataataagaatagttaacctaactagttgttaattaaccattaacatactttatctctgatgacaggtgacaatgttttcactgcaaaa |
4236367 |
T |
|
| Q |
497 |
gctatagcatttgaatgcggaattcttcaaccaaatcaggacacagatgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgaagagaggt |
596 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4236366 |
gctatagcatttgaatgtggaattcttcaacctaatcaggacacggatgaaacagtggttgaaggcgaacaatttcgtaacttcacacacgaagagaggt |
4236267 |
T |
|
| Q |
597 |
tggcgaaagttgagaaaatatctgtgatggcaaggtcttctccttttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgt |
696 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236266 |
tggcgaaagttgagaaaatctctgtgatggcaagatcttctccatttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgt |
4236167 |
T |
|
| Q |
697 |
aactggagatggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagat |
796 |
Q |
| |
|
||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236166 |
aaccggagacggaacaaacgatgcaccagcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagat |
4236067 |
T |
|
| Q |
797 |
attgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaa |
896 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236066 |
attgttatattagatgacaattttgcatctattgtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaa |
4235967 |
T |
|
| Q |
897 |
cagtgaatgtggcagcacttgttataaattt |
927 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4235966 |
cagtgaatgtggcagcacttgttataaattt |
4235936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 725 - 788
Target Start/End: Original strand, 30441333 - 30441396
Alignment:
| Q |
725 |
gcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagaga |
788 |
Q |
| |
|
||||||| |||||||| ||||||| |||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
30441333 |
gcattgatagaagctggtattggaatttccatgggaattcaaggtaccgaagttgcaaaagaga |
30441396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 366
Target Start/End: Original strand, 37067887 - 37067926
Alignment:
| Q |
327 |
acaggtattactaaaatatcttatttatcgataacttgat |
366 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
37067887 |
acaggtattactaaaatatctcatttattgataacttgat |
37067926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 37060411 - 37060449
Alignment:
| Q |
327 |
acaggtattactaaaatatcttatttatcgataacttga |
365 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
37060411 |
acaggtattactaaaatatctcatttattgataacttga |
37060449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 472 - 927
Target Start/End: Complemental strand, 6185515 - 6185060
Alignment:
| Q |
472 |
aggtgataatgttttcactgcaaaagctatagcatttgaatgcggaattcttcaaccaaatcaggacacagatgaaacagtggttgaaggtgaacaattt |
571 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
6185515 |
aggtgacaatgttttcactgcgaaagctatagcatttgaatgtggaattcttcaacctaatcaggacatagatgaaacggtggttgaaggcgaacaattt |
6185416 |
T |
|
| Q |
572 |
cgtaacttcacacacgaagagaggttggcgaaagttgagaaaatatctgtgatggcaaggtcttctccttttgataaacttctaatggtacaatgcttaa |
671 |
Q |
| |
|
|| ||||| || ||||||||||| || | || ||||| ||||||| |||||||||||| || ||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
6185415 |
cgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctccatttgacaaacttctaatggttcaatgcttaa |
6185316 |
T |
|
| Q |
672 |
aacaaaaaggtcatgtagttgctgtaactggagatggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtac |
771 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
6185315 |
aacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccgatatcggactttcaatgggaattcaaggtac |
6185216 |
T |
|
| Q |
772 |
tgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacatt |
871 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
6185215 |
tgaagttgcaaaagagagttcagatattgttatattagatgacaattttgcatctatcgtaacagtgttaaactggggaagatgtgtttacaacaacatt |
6185116 |
T |
|
| Q |
872 |
caaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattt |
927 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
6185115 |
caaaaattcattcaatttcaactaacagtgaatgtggcagcccttgttatcaattt |
6185060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 354
Target Start/End: Complemental strand, 6185959 - 6185611
Alignment:
| Q |
6 |
ggagtagcagagatggtactaagaatgtgctcaaaataccatgatcgttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagga |
105 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||| |||| ||||| ||| |||||||| ||||||||||||||||||| | ||| ||||||||||||| | |
|
|
| T |
6185959 |
ggagcagccgagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagca |
6185860 |
T |
|
| Q |
106 |
ttattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagat |
205 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||| |||| | | ||||||||| | | |||||| |
|
|
| T |
6185859 |
ttattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagat |
6185760 |
T |
|
| Q |
206 |
ggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacggcagtggaagcttgccaacatgct |
305 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
6185759 |
ggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgcc |
6185660 |
T |
|
| Q |
306 |
ggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
6185659 |
ggtgtgaatgtcaaaatgattacaggtattactataatatctcatttat |
6185611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 707 - 926
Target Start/End: Complemental strand, 19593039 - 19592829
Alignment:
| Q |
707 |
ggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatat |
806 |
Q |
| |
|
|||| ||| |||||| | ||| ||||||||||| |||||| |||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
19593039 |
ggaagaaatgatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatat |
19592940 |
T |
|
| Q |
807 |
tagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgt |
906 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19592939 |
tagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt---------agtgaatgt |
19592849 |
T |
|
| Q |
907 |
ggcagcacttgttataaatt |
926 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
19592848 |
ggcagcacttgttatcaatt |
19592829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 647 - 924
Target Start/End: Complemental strand, 38357160 - 38356883
Alignment:
| Q |
647 |
aaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaactggagatggaacaaacgatgcaccggcattgaaagaagctgatattg |
746 |
Q |
| |
|
|||||| | ||||| |||||||||| | | ||||||||||||||||| || || || || || |||||||||||||| || || |||||||||||||| | |
|
|
| T |
38357160 |
aaacttttgatggtgcaatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcacctgccttaaaagaagctgatatag |
38357061 |
T |
|
| Q |
747 |
gactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattg |
846 |
Q |
| |
|
||||||| |||||||| ||||| || ||||| || ||||| ||||| ||||| || || ||||| ||||| || ||| | | ||| ||| ||| || |
|
|
| T |
38357060 |
gactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatatcgtcatcttagacgacaacttcaattctgttgcaactgttttaaggtg |
38356961 |
T |
|
| Q |
847 |
gggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaa |
924 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||||| |||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
38356960 |
gggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgataaa |
38356883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 327 - 366
Target Start/End: Complemental strand, 402337 - 402298
Alignment:
| Q |
327 |
acaggtattactaaaatatcttatttatcgataacttgat |
366 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
402337 |
acaggtattactaaaatatctcatttatcgataacttgat |
402298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 45369930 - 45369992
Alignment:
| Q |
378 |
ctctatttatacatacgagtctatatgaatacgaagaagataataagaataactaattcttaa |
440 |
Q |
| |
|
||||||||||||||| ||||| ||||||| | ||| | ||||| ||| ||||||||||||||| |
|
|
| T |
45369930 |
ctctatttatacatatgagtccatatgaaaatgaaaaggataacaaggataactaattcttaa |
45369992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 21847717 - 21847622
Alignment:
| Q |
6 |
ggagtagcagagatggtactaagaatgtgctcaaaataccatgatcgttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaa |
101 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||| | | | | |||||||| ||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
21847717 |
ggagaagcagagatggtactaagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattcgaa |
21847622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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