View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_11 (Length: 427)
Name: NF8088_low_11
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 26579077 - 26578668
Alignment:
| Q |
1 |
gaggcgaaatggaggttacagccgaggtgaggaaattcttggcttctaggaaggtagtaaagaaagcaatcctcaaagctttggagaatttgaaggctaa |
100 |
Q |
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| T |
26579077 |
gaggcgaaatggaggttacagccgaggtgaggaaattcttggcttctaggaaggtagtaaagaaagcaatcctcaaagctttggagaatttgaaggctaa |
26578978 |
T |
|
| Q |
101 |
tgtgaagaaaggtaaaggaaaactattatctcctagcaacaataaggatcatgaaaaagtgactttggttagtttgttaagagatgtggaagtaattact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26578977 |
tgtgaagaaaggtaaaggaaaactattatctcctagcaacaataaggatcatgaaaaagtgagtttggttagtttgttaagagatgtggaagtaattact |
26578878 |
T |
|
| Q |
201 |
ctttcaatgttggagtcacttttgatctttatctctggaccggcgcaatcgaaaccaagtaattattggtctttggtttcaaagcttatgatgcagaaca |
300 |
Q |
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| T |
26578877 |
ctttcaatgttagagtcacttttgatctttatctctggaccagcgcaatcgaaaccaagtaattattggtctttggtttcaaagcttatgatgcagaaca |
26578778 |
T |
|
| Q |
301 |
agaaggtttcttttacacaagaagccgatatcaacgagttttctaatgttgatgctgcattgcagtcttttgtgtttaatgtgacaagaaaatcagataa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26578777 |
agaaggtttcttttacacaagaagccgatatcaacgagttttctaatgttgatgctgcattgcagtcttttgtgtttaatgtgacaagaaaatcagataa |
26578678 |
T |
|
| Q |
401 |
tgtcaatcat |
410 |
Q |
| |
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|||||||||| |
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| T |
26578677 |
tgtcaatcat |
26578668 |
T |
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