View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_12 (Length: 414)
Name: NF8088_low_12
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_12 |
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| [»] scaffold0989 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 55 - 399
Target Start/End: Original strand, 43147585 - 43147930
Alignment:
| Q |
55 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaaatctcactatggcgttctccttttct |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147585 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaaatctcactatggcgttctccttttct |
43147684 |
T |
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| Q |
155 |
aacaatattcccctcactttggaagcatggtg-ttggtagatcaaattgatctaatttattattctttggtgcatttttggtcgagtgttttaaatggtg |
253 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147685 |
aacaatattcccctcactttggaagcatggtggttggtagatcaaattgatctaatttattattctttggtgcatttttggtcgagtgttttaaatggtg |
43147784 |
T |
|
| Q |
254 |
ggaggaatcctagttccattttttcattgcccattcaatccattttatttttcagtgcaaaccttcctatggattcattgtaacagttatgtgatataat |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147785 |
ggaggaatcctagttccattttttcattgcccattcaatccattttatttttcagtgcaaaccttcctatggattcattgtaacagttatgtgatataat |
43147884 |
T |
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| Q |
354 |
ttgggttaaatattctaactttttattttattcttgcttaaaaact |
399 |
Q |
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| T |
43147885 |
ttgggttaaatattctaactttttattttattcttgcttaaaaact |
43147930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 165 - 332
Target Start/End: Original strand, 43159051 - 43159224
Alignment:
| Q |
165 |
ccctcactttggaagcatgg-tgttggtagatcaaattgatctaatttattattctttggtgcatttttggtcgagtg--------ttttaaatggtggg |
255 |
Q |
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| T |
43159051 |
ccctcactttggaagcatgggtgttggtagatcaaattgatctaatttatt---ctttggtgcattcttgattgattgattgattgttttagatggtggg |
43159147 |
T |
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| Q |
256 |
aggaatcctagttccattttttcattgcccattcaatccattttatttttcagtgcaaaccttcctatggattcatt |
332 |
Q |
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| T |
43159148 |
aggaatcttagttccattttttcattatccattcaatccatattatttttcggtgcaagccttcccatggcttcatt |
43159224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 3507917 - 3507976
Alignment:
| Q |
55 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcct |
114 |
Q |
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| T |
3507917 |
gaatcaaattattctctcaagcaatagaaattgttcttctctcatatattatctcctcct |
3507976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 26947017 - 26946934
Alignment:
| Q |
55 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaaatctcactat |
138 |
Q |
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| T |
26947017 |
gaatcaaagtattctctcaagtaataaaaatagttcttctctcaaatattccctcctcctaaatttctcacaaagtctcactat |
26946934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 3640030 - 3640126
Alignment:
| Q |
56 |
aatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaaatctcactatggcgttctcctttt |
152 |
Q |
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| T |
3640030 |
aatcaaagcattctctcacggaatagaaattgtccttctctttaatattctctcctcctcaatttctcccaaaagctcactataacgttctcctttt |
3640126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 1192 - 1119
Alignment:
| Q |
55 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaa |
128 |
Q |
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||||||||| || |||||||| |||||||||||| |||| ||| | ||| |||| |||| ||||||||||||| |
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| T |
1192 |
gaatcaaagtatcctctcaagaaatagaaattgttattctctcaaatattctctcatcctaaattcctcacaaa |
1119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 18791013 - 18790940
Alignment:
| Q |
55 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaa |
128 |
Q |
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| T |
18791013 |
gaatcaaagtatcctctcaagtaatagaaatagttcttctctcaagtattatctcctcctaaatttctcacaaa |
18790940 |
T |
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