View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_13 (Length: 404)
Name: NF8088_low_13
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 390
Target Start/End: Complemental strand, 1704793 - 1704426
Alignment:
| Q |
26 |
tgtttcaagcaaacactactcttttaatataactatatgttagaaattagggcacgaaatcgtttttgaattaaacaaaattgaagttagaaaaacacga |
125 |
Q |
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| T |
1704793 |
tgtttcaagcaaacactactcttttaatagaattatacattagaaattagggcacgaaattgtttttgaattaaataaaattgaagttagaaaaacacga |
1704694 |
T |
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| Q |
126 |
gcttcacacaaaataaaaatatctatgttttaacaataaatgtgtagaagtggctataatgatattaccnnnnnnngaaagaattgattatataaaattt |
225 |
Q |
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| T |
1704693 |
gcttcacacaaaataaaaatatctatgttttaacgataaatgtgtagaagtagctataatgatattaccaaaaaaagaaagaattgattatataaaattt |
1704594 |
T |
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| Q |
226 |
ataatgagnnnnnnnnnnnnnnnnngacaaat-aatttataatgaatgttagtagagtagtcgaacatagacatcaccttatctcttatatcactcc--c |
322 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1704593 |
ataatgaattttttatttttattttgacaaataaatttataatgaatgttagtagagtagtcgaacatagacatcaccttatctcttatatcactccctc |
1704494 |
T |
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| Q |
323 |
tccaaatgacctattttgttttcatataggcttttacgatattttagtttagtttggatactttttat |
390 |
Q |
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| T |
1704493 |
tccaaatgacctattttgttttcatataggcttttacgatattttagtttagtttggatactttttat |
1704426 |
T |
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