View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_16 (Length: 380)
Name: NF8088_low_16
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 47257641 - 47258013
Alignment:
| Q |
17 |
aaatattagagaggtaaatttcaaacaaagttcaaagattatgcagttcaagtttgatcctcggggttttgaaataaggttgtttattttgttaatttgt |
116 |
Q |
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| T |
47257641 |
aaatattagagaggtaaatttcaaacaaagttcaaagattatgcagttcaagtttgatcctcagggttttgaaataaggttgtttattttgttaatttgt |
47257740 |
T |
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| Q |
117 |
ttt---------taattatttcaacaaactatgttaatgttggatttgtagaataggtgttaattttgtacccnnnnnnnngagaataggtgttaatttg |
207 |
Q |
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| T |
47257741 |
tttatttgtttttaattatttcaacaaactatgttaatgttggatttgtagaataggtgttaattttgtaccaaaaaaaaagagaataggtgttaatttg |
47257840 |
T |
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| Q |
208 |
gatggatctgagaaattattagaatgtaaattctgacttgtataatcattggattgtgcatgcattgcattgtggttgagatcactagattccaataata |
307 |
Q |
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| T |
47257841 |
gatggatctgagatattattagaatgtaaattctgacttgtataatcattggattgtgcatgcattgcattgtggttgagatcactagattccaataata |
47257940 |
T |
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| Q |
308 |
tacttctgctaagaaggagaaatttcacatgatgaatgcagagtttctcagcatgtgagtcccacatgatgat |
380 |
Q |
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| T |
47257941 |
tacttctgctaagaaggagaaatttcacatgatgaatgcagagtttctcagcatgtgagtcccacatgatgat |
47258013 |
T |
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