View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_17 (Length: 367)
Name: NF8088_low_17
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 47 - 282
Target Start/End: Complemental strand, 45807634 - 45807399
Alignment:
| Q |
47 |
tctctagcataggtttgtaaacatttctttggagttctgaaatctgatttttcttaaatctgttttcccctcctattcttgacttgactgtcaatccttc |
146 |
Q |
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| T |
45807634 |
tctctagcataggtttgtaaacatttctttggagttctgaaatctgatttttcttaaatctgttttcccctcctattcttgacttgactgtcaatccttc |
45807535 |
T |
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| Q |
147 |
gaaataattttcacgtggttatttttcatttttagaaaacaaatgatttatttggttgttcactatgatgcctaaattgttcaaacatggctaatatttt |
246 |
Q |
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| T |
45807534 |
gaaataattttcacgtggttatttttcatttttagaaaacaaatgatttatttggttgttcactatgatgcctaaattgttcaaacatggctaatatttt |
45807435 |
T |
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| Q |
247 |
atctgcttcacataggatctgatgaaaatatcaagg |
282 |
Q |
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| T |
45807434 |
atctgcttctcataggatctgatgaaaatatcaagg |
45807399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 270 - 360
Target Start/End: Complemental strand, 45807377 - 45807287
Alignment:
| Q |
270 |
gaaaatatcaaggttgacgagtaatgttttttcaatgcgttttaatgttctgcaatgcaacaatgttaaaaaattatcatcgttcttctca |
360 |
Q |
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| T |
45807377 |
gaaaatatcaaggttgacgagtaatgttttttcaatgcgttttaatgttctgcaatgcaacaatgttaaaaaattatcatcgttcttctca |
45807287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 822195 - 822258
Alignment:
| Q |
208 |
actatgatgcctaaattgttcaaacatggctaata-ttttatctgcttcacataggatctgatg |
270 |
Q |
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| T |
822195 |
actatgatgcctaaattaatcaaacatggccaatatttttatccgcttcacataggatctgatg |
822258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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