View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8088_low_2 (Length: 721)

Name: NF8088_low_2
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8088_low_2
NF8088_low_2
[»] chr5 (7 HSPs)
chr5 (34-464)||(16882960-16883390)
chr5 (464-707)||(16882662-16882905)
chr5 (212-440)||(42502493-42502719)
chr5 (17-134)||(42502314-42502430)
chr5 (15-46)||(16883393-16883424)
chr5 (479-586)||(42502916-42503023)
chr5 (498-528)||(14590738-14590768)
[»] chr7 (4 HSPs)
chr7 (17-130)||(22113464-22113577)
chr7 (17-130)||(40525864-40525977)
chr7 (59-120)||(40526030-40526091)
chr7 (34-135)||(24351828-24351929)
[»] chr3 (1 HSPs)
chr3 (81-342)||(36826427-36826686)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 34 - 464
Target Start/End: Complemental strand, 16883390 - 16882960
Alignment:
Q  34 attgctgaaaaaataagatacatcgacattgagtttgaggcgctcaagaggaagatgaactcaactatgcttctgatgtgcattgttgattcctctagat 133  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16883390 attgctgaaaaaataagatacatcgacattgagtttgaggcgcccaagaggaagatgaactcaactatgcttctgatgtgcattgttgattcctctagat 16883291  T
Q  134 gtatttgatttttaaaattccgccaaaatgttatcaacatgattgtttaccaaattcaagagcttccctcccatatctgatcgaagtgaaagtatgagca 233  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||    
T  16883290 gtattagatttttaaaattccgccacaatgttatcaacatgattgtttaccaaattcaagagcttccctcccatatctaatcaaagagaaagtatgagca 16883191  T
Q  234 tatttttatccttccatagagcacgccataagtccgaataagatataccaattccaaagtagattatcaatatccttactcgtcaagttctattaaatcc 333  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  16883190 tatttttatccttccaaagagcacgccataagtccgaataagatataccaattccaaagtagattatcaatatccttactcgtcaagttccattgaatcc 16883091  T
Q  334 aagcaaaaataccaagacataagaacttaactactccaatgttcttcttttatgacactggaccaaagctcatttgcatcttcaaaatcactcagaatat 433  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  16883090 aagcaaaaagaccaagacataagaacttaactactccagtgttcttcttttatgaccctggaccaaagctcattcgcatcttcaaaatcactcagaatat 16882991  T
Q  434 gcaaaattgatcatagagcttccatacatct 464  Q
    ||||||||||| |||||||||||||||||||    
T  16882990 gcaaaattgattatagagcttccatacatct 16882960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 464 - 707
Target Start/End: Complemental strand, 16882905 - 16882662
Alignment:
Q  464 tctctcattcatgagcaattttccacgaagtggctctaattctagctggtcccttccacttccaacctttgtcaaatagaagatccagattgtcctcact 563  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16882905 tctctcattcatgagcaattttccacaaagtggctctaattctagttggtcccttccacttccaacctttgtcaaatagaagatccagattgtcctcact 16882806  T
Q  564 attatttatagtactcagcatctcatacgcactttttatggagaactatccattggaagctagattcaaatggggcacatctggccaccatgagagggag 663  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16882805 attatttatagtactcagcatctcatatgcactttttatggagaactatccattggaagctagattcaaatggggcacatctggccaccatgagagggag 16882706  T
Q  664 attggacaagatcaaaagcttctctcatatatgtagaaatatgt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  16882705 attggacaagatcaaaagcttctctcatatatgtagaaatatgt 16882662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 212 - 440
Target Start/End: Original strand, 42502493 - 42502719
Alignment:
Q  212 gatcgaagtgaaagtatgagcatatttttatccttccatagagc--acgccataagtccgaataagatataccaattccaaagtagattatcaatatcct 309  Q
    |||||| | |||| ||||||||||||| |||||||||| | | |  || ||| || || ||| |||||| ||||||||||| |||||||| |||| |  |    
T  42502493 gatcgatgagaaaatatgagcatatttatatccttccaaacaacccacaccaaaactctgaagaagataaaccaattccaaggtagattaccaatgtaat 42502592  T
Q  310 tactcgtcaagttctattaaatccaagcaaaaataccaagacataagaacttaactactccaatgttcttcttttatgacactggaccaaagctcatttg 409  Q
    ||| |||||||||| ||| |||  || ||||||||||||||   |||||||    |||||||||  |||| |||||||||  | || |||||||| || |    
T  42502593 tacacgtcaagttccattcaatttaaacaaaaataccaagattgaagaact----tactccaattctcttattttatgactatagatcaaagctccttag 42502688  T
Q  410 catcttcaaaatcactcagaatatgcaaaat 440  Q
     |||||||||||| |||| ||||| ||||||    
T  42502689 tatcttcaaaatctctcaaaatatacaaaat 42502719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 42502314 - 42502430
Alignment:
Q  17 ccacaagttgagctaccattgctgaaaaaataagatacatcgacattgagtttgaggcgctcaagaggaagatgaactcaactatgcttctgatgtgcat 116  Q
    ||||||| ||||||||||||| | || |||| |||| ||||| |||||||||||||| | | | ||| | ||||||| ||| | ||||||||||  |||     
T  42502314 ccacaagctgagctaccattgtt-aataaatgagatccatcgtcattgagtttgaggtgtttacgagaaggatgaacccaattgtgcttctgattggcaa 42502412  T
Q  117 tgttgattcctctagatg 134  Q
    ||||||||||||||||||    
T  42502413 tgttgattcctctagatg 42502430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 16883424 - 16883393
Alignment:
Q  15 ctccacaagttgagctaccattgctgaaaaaa 46  Q
    ||||||||||||||||||||||||||||||||    
T  16883424 ctccacaagttgagctaccattgctgaaaaaa 16883393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 586
Target Start/End: Original strand, 42502916 - 42503023
Alignment:
Q  479 caattttccacgaagtggctctaattctagctggtcccttccacttccaacctttgtcaaatagaagatccagattgtcctcactattatttatagtact 578  Q
    ||||||| ||| ||||| |||| || |||| |||||||| ||| |||||| | ||| |||| || | ||| | ||||| |||| ||||||||||||||||    
T  42502916 caatttttcacaaagtgtctcttatcctagttggtccctcccatttccaaacgttgacaaaaaggaaatctaaattgttctcattattatttatagtact 42503015  T
Q  579 cagcatct 586  Q
    || |||||    
T  42503016 caacatct 42503023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 498 - 528
Target Start/End: Original strand, 14590738 - 14590768
Alignment:
Q  498 tctaattctagctggtcccttccacttccaa 528  Q
    |||||||||||||||||||||||||||||||    
T  14590738 tctaattctagctggtcccttccacttccaa 14590768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 22113464 - 22113577
Alignment:
Q  17 ccacaagttgagctaccattgctgaaaaaataagatacatcgacattgagtttgaggcgctcaagaggaagatgaactcaactatgcttctgatgtgcat 116  Q
    ||||||| |||||| |  ||||||||||| |  ||| |||||||||| ||||| |||| | || ||||| ||||||| |||||| ||||| |||||||||    
T  22113464 ccacaagctgagcttctgttgctgaaaaagtgtgatccatcgacatttagtttcaggcacccatgaggaggatgaacccaactacgcttcagatgtgcat 22113563  T
Q  117 tgttgattcctcta 130  Q
    |||| ||| |||||    
T  22113564 tgtttatttctcta 22113577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 40525977 - 40525864
Alignment:
Q  17 ccacaagttgagctaccattgctgaaaaaataagatacatcgacattgagtttgaggcgctcaagaggaagatgaactcaactatgcttctgatgtgcat 116  Q
    ||||||| |||||| |  ||||||||||| |  ||| |||||||||| ||||| |||| | || ||||| ||||||| |||||| ||||| |||||||||    
T  40525977 ccacaagctgagcttctgttgctgaaaaagtgtgatccatcgacatttagtttcaggcacccatgaggaggatgaacccaactacgcttcagatgtgcat 40525878  T
Q  117 tgttgattcctcta 130  Q
    |||| ||| |||||    
T  40525877 tgtttatttctcta 40525864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 40526091 - 40526030
Alignment:
Q  59 acattgagtttgaggcgctcaagaggaagatgaactcaactatgcttctgatgtgcattgtt 120  Q
    ||||||||||| |||| | || ||||| ||||||||||||||||||| ||||||| ||||||    
T  40526091 acattgagtttcaggcacccaggaggaggatgaactcaactatgcttttgatgtgtattgtt 40526030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 24351828 - 24351929
Alignment:
Q  34 attgctgaaaaaataagatacatcgacattgagtttgaggcgctcaagaggaagatgaactcaactatgcttctgatgtgcattgttgattcctctagat 133  Q
    |||||||| |||||  ||| |||| |||||||||||||| ||   | ||||| |||||||  || |||| || ||||||| ||||||||||| |||||||    
T  24351828 attgctgataaaatgtgattcatcaacattgagtttgagtcgtctaggaggaggatgaaccaaattatgtttttgatgtgtattgttgattcatctagat 24351927  T
Q  134 gt 135  Q
    ||    
T  24351928 gt 24351929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 342
Target Start/End: Complemental strand, 36826686 - 36826427
Alignment:
Q  81 gaggaagatgaactcaactatgcttctgatgtgcattgttgattcctctagatgtatttgatttttaaaattccgccaaaatgttatcaacatgattgtt 180  Q
    ||||| |||| |||| | |||||||||||||| || |||||||||||| ||||| ||| || ||||| | |||  ||| ||| |  | ||  ||| ||||    
T  36826686 gaggatgatggactcgattatgcttctgatgtacaatgttgattcctcgagatgcattggacttttaca-ttctaccacaatatcgtgaatgtgaatgtt 36826588  T
Q  181 taccaaattcaagagcttccctcccatatctgatcgaagtgaaagtatgagcatatttttatccttccatagagcacgccataagtccgaataagatata 280  Q
    ||||| |||| |||||||  || |||| |||||| || | |||| ||| ||||| |||  ||||||||| || |  | |||||| ||| || |||||| |    
T  36826587 taccagattccagagcttatcttccatgtctgattgatgagaaaatataagcatctttcaatccttcca-aggggtcaccataactccaaagaagataga 36826489  T
Q  281 ccaattccaaagtagattatcaatatccttactcgtcaagttctattaaatccaagcaaaaa 342  Q
     ||||  |||  || |||| |||| ||||||| |||||||||||||| ||||||||||||||    
T  36826488 acaatctcaagttacattaccaatgtccttacacgtcaagttctattcaatccaagcaaaaa 36826427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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