View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_21 (Length: 337)
Name: NF8088_low_21
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 45283040 - 45283353
Alignment:
| Q |
1 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45283040 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggac |
45283139 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283140 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
45283239 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
45283240 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaattcctcatatcagcgatttggtcatgaacagcttgaatgttgtt |
45283339 |
T |
|
| Q |
301 |
gtcatgaacacact |
314 |
Q |
| |
|
|||||||||||||| |
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| T |
45283340 |
gtcatgaacacact |
45283353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 45294428 - 45294741
Alignment:
| Q |
1 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
45294428 |
agggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
45294527 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
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| T |
45294528 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcaccgtcatttt |
45294627 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
45294628 |
catcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaacagcttgaatgttgct |
45294727 |
T |
|
| Q |
301 |
gtcatgaacacact |
314 |
Q |
| |
|
|||||||||||||| |
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|
| T |
45294728 |
gtcatgaacacact |
45294741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 45303388 - 45303701
Alignment:
| Q |
1 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
45303388 |
agggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
45303487 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
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|
| T |
45303488 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcaccgtcatttt |
45303587 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
45303588 |
catcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaacagcttgaatgttgct |
45303687 |
T |
|
| Q |
301 |
gtcatgaacacact |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45303688 |
gtcatgaacacact |
45303701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 45271266 - 45271577
Alignment:
| Q |
1 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||| |
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|
| T |
45271266 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagac |
45271365 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45271366 |
aaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
45271465 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
45271466 |
catcgtcaaatccttccatacaaccttgtttgtaagagataactgcactcaaccaattcctcatatcagcagtttggtcatgaacagcttcaatgttgtt |
45271565 |
T |
|
| Q |
301 |
gtcatgaacaca |
312 |
Q |
| |
|
|||| ||||||| |
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|
| T |
45271566 |
gtcacgaacaca |
45271577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 45274799 - 45275102
Alignment:
| Q |
1 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45274799 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
45274898 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
45274899 |
aaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcaccatcatttg |
45274998 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || || || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
45274999 |
catcgtcaaatccttccatacaggcttgtctgtaggatatgactgcactcaaccaattcctcatatcagcagtttggtcatgaacagcttgaatgttgtt |
45275098 |
T |
|
| Q |
301 |
gtca |
304 |
Q |
| |
|
|||| |
|
|
| T |
45275099 |
gtca |
45275102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 38588624 - 38588718
Alignment:
| Q |
206 |
tcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
300 |
Q |
| |
|
|||||||| ||||| || | |||| ||| |||||||| |||||||||||||| || | ||||| ||||| ||||||| |||||||||||||| |
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|
| T |
38588624 |
tcaaatccgtccatgcatgattgttggtatgagataacagcactcaaccaattcctaaaatcaggtgtttgatcatgaatggcttgaatgttgtt |
38588718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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