View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_22 (Length: 337)
Name: NF8088_low_22
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 41 - 265
Target Start/End: Complemental strand, 9092005 - 9091782
Alignment:
| Q |
41 |
tgaaggaaacattccttatcatttttctttttcatgtgaacctattgtattttgcattgttatgatgttgttgcttaatgattcatggnnnnnnnntgag |
140 |
Q |
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| T |
9092005 |
tgaaggaaacagtccttataattcttctttttcatgtgagtctattgaattttgcattgatatgatgttgttgtttaatgattcatg-aaacaaaatgag |
9091907 |
T |
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| Q |
141 |
tttttattctacactttatataatcaacttaaattttgattcctttttaaattactcctaaaatacatattacaaatcaactaagcaaaagtgattgaat |
240 |
Q |
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| T |
9091906 |
tttgtattcttcactttgaataatcaacttatattttgattcctttttaaattactccaaaaatacatattacaaatcaactaagctaaagtcattgaat |
9091807 |
T |
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| Q |
241 |
tgcaagttgtaaacattataagata |
265 |
Q |
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| T |
9091806 |
tgcaagttgtaaacgttataggata |
9091782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 319
Target Start/End: Complemental strand, 31855263 - 31855116
Alignment:
| Q |
173 |
attttgattcctttttaaattactcctaaaatacatattacaaatcaactaagcaaaagtgattgaattgcaagttgta-aacattataagataacttgc |
271 |
Q |
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|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| || |||||| |||||||| |||||| |||||||| || | |
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| T |
31855263 |
attttggttcctttttaaattacaccaaaaatacatattacaaatcaactaagcaaaagtaatcgaattgaaagttgtacaacattgtaagataaattac |
31855164 |
T |
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| Q |
272 |
cactatcaacaatccttcatgcatatcactagagatacccttgaaaac |
319 |
Q |
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| T |
31855163 |
cactataaacaatccttcatggatatcactagggatacccttggaaac |
31855116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 31855319 - 31855277
Alignment:
| Q |
146 |
attctacactttatataatcaacttaaattttgattccttttt |
188 |
Q |
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| T |
31855319 |
attctacactttgtataatcaacttatattttgattccttttt |
31855277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 31855364 - 31855317
Alignment:
| Q |
16 |
ctagttctaaatgaattatgatttctgaaggaaacattccttatcatt |
63 |
Q |
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| T |
31855364 |
ctagttctaaattaattacgatttctgaaggaaacaccccttatcatt |
31855317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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