View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8088_low_24 (Length: 261)

Name: NF8088_low_24
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8088_low_24
NF8088_low_24
[»] chr6 (3 HSPs)
chr6 (1-234)||(11001825-11002058)
chr6 (2-230)||(10981593-10981821)
chr6 (2-228)||(10967667-10967896)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11001825 - 11002058
Alignment:
Q  1 cccacaagaacaatacattgtcaatgtttcagccacatttccgtcaattaatttccactatattcctccaatttcattctctacaacacttccaacacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11001825 cccacaagaacaatacattgtcaatgtttcagccacatttccgtcaattaatttccactatattcctccaatttcattctctacaacacttccaacacac 11001924  T
Q  101 ttacttacacttgaagtctcacacaaaagcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaagctattatcttagatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11001925 ttacttacacttgaagtctcacacaaaagcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaaggtattatcttagatt 11002024  T
Q  201 tcctcacctatagtgcctcacaagtcaccaccaa 234  Q
    ||||||||||||||||||||||||||||||||||    
T  11002025 tcctcacctatagtgcctcacaagtcaccaccaa 11002058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 10981593 - 10981821
Alignment:
Q  2 ccacaagaacaatacattgtcaatgtttcagccacatttccgtcaattaatttccactatattcctccaatttcattctctacaacacttccaacacact 101  Q
    ||||||||||||||||| | |||||||||  |||||||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||  || ||    
T  10981593 ccacaagaacaatacatagccaatgtttcgaccacatttccctcaattaatttccattacattcctccaatttcattccctacaacacttccacaactct 10981692  T
Q  102 tacttacacttgaagtctcacacaaaagcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaagctattatcttagattt 201  Q
    ||   || |||||||| |  ||  | |||||| | |||||| | ||||||||| | || |||||||||||||||||| |||||||| |||||||||||||    
T  10981693 tatgcacccttgaagtttgtcaacatagcaacaaccatgttgagaacattctccattctatttccaaaaccacaaacctcaaagctgttatcttagattt 10981792  T
Q  202 cctcacctatagtgcctcacaagtcacca 230  Q
    | |||||||||||||||||||||| ||||    
T  10981793 cttcacctatagtgcctcacaagtaacca 10981821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 10967667 - 10967896
Alignment:
Q  2 ccacaagaacaatacattgtcaatgtttcagccacatttccgtcaattaatttccactatattcctccaatttcattctctacaacacttccaacac-ac 100  Q
    ||||||||||||||||| | |   |||||  ||||||| || ||||| ||||| || || ||||||| |||||||  | | |||||||||||| ||| ||    
T  10967667 ccacaagaacaatacatagcctcagtttcttccacattcccttcaatcaattttcattacattcctctaatttcaccccccacaacacttccaccaccac 10967766  T
Q  101 --ttacttacacttgaagtctcacacaaaagcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaagctattatcttaga 198  Q
      |||||||| |||||  |||| ||| |||||||  |  |||||||||| |||||| | ||||||||||||||||||||| ||||||   ||||||||||    
T  10967767 ctttacttacccttgagctctctcaccaaagcaataactatgttcacaatattctccaatccatttccaaaaccacaaacctcaaaggagttatcttaga 10967866  T
Q  199 tttcctcacctatagtgcctcacaagtcac 228  Q
    ||| ||||| |||| ||||||  |||||||    
T  10967867 ttttctcacatataatgcctcgaaagtcac 10967896  T

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