View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_26 (Length: 240)
Name: NF8088_low_26
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31808704 - 31808477
Alignment:
| Q |
1 |
aaaaaatgcacacggttgaaactaatagccatcctcttttctattctatgtgtaaaatgaacactattaaagcctatttaaagagattacaaggaatcac |
100 |
Q |
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| T |
31808704 |
aaaaaatgcacacggttgaagctaatagccatcctcttttctattcaatgtgtaaaatgaacactactaaagcctatttaaagagattacaaggaatcac |
31808605 |
T |
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| Q |
101 |
tccaacaaatgnnnnnnnttataaaacggaaatgaaatctcnnnnnnnaatggtttcatattttaaaatgttaact----ataaatgctttgaccgggtc |
196 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31808604 |
tccaacaaatg-aaaaaattataaaacggaaatgaaatctctttttttaatggtttcatattttaaaatgttaactataaataaatgctttgaccgggtc |
31808506 |
T |
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| Q |
197 |
aaaagaatgcattcaactagcacatattc |
225 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31808505 |
aaaagaatgcattcaactagcacatattc |
31808477 |
T |
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