View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_3 (Length: 694)
Name: NF8088_low_3
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_3 |
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| [»] scaffold0118 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Original strand, 13716168 - 13716788
Alignment:
| Q |
1 |
tcagagatgatgagtttccaacaaagtaacaacattgctgttttattaacaatcaaaggatcatgcagggctatcccaccatctgctttgggcttgctaa |
100 |
Q |
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|||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||| |||||| || |||||||| ||| || |
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| T |
13716168 |
tcagaggtgatgagtttccaacaaagaaacaacattgcagttttattaacaatcaaaggatctcgcagtgctaacccaccctcaactttgggcctgcaaa |
13716267 |
T |
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| Q |
101 |
tattgctcctagatacaattcaaatcttctttgtcgaagtatctccgctccaaatgaaattagtaaacattcttctaagctgcttaatcaaagagatagg |
200 |
Q |
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| T |
13716268 |
tattgctcctagatacaatgcaaatcttctttgtcgaagtatctccgctccaaatgaaattagtaaacattcttctaagctgcttaatcaaagagatagg |
13716367 |
T |
|
| Q |
201 |
ccagacatacacatggaaggagtatactagcatgcgaataaccaccgagttgacaagttgaaccctccctatgatggttactagatgacctttccaagaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
13716368 |
ccagacatacacatggaaggagtatactagcatgcgaataattaccgagttgacaagttgaacgctccctatgatggttactagaggacctttccaagaa |
13716467 |
T |
|
| Q |
301 |
gccagcttcgaacagattctatcaacaataggctgaaaatgttgaactttaagatttcctttaaacaaaagtatccccatataagtaaaaggcatggagg |
400 |
Q |
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| T |
13716468 |
gccagcttcgaacagattctatcaacaataggctgaaaatgttgaactttgggatttcctttaaacaaaagtatccccagataagtaaaaggcatggagg |
13716567 |
T |
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| Q |
401 |
catgcttaaaaccagtgaggccagctatggtacaaagcctagaaagggggatggacttagaataaaacgtacttttaatgttgttgctaatttgaccaga |
500 |
Q |
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| T |
13716568 |
catgcttaaaaccagtgaggccagatatggtacaaagcctagaaagagggatggacttagaataaaacgtacttttaatgttgttgataatttgaccaga |
13716667 |
T |
|
| Q |
501 |
atagctaccatagctttcaaaaagttccatgatatgcttgacattattaatattaactttacagataataagaatgtcgtcggcgtacaagcaatggctg |
600 |
Q |
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| T |
13716668 |
atagctaccatagctttcaaaaagttccatgatatgcttgacattatttatattaactttacagataataagaatgtcgtcggcgtacaagcaatggctg |
13716767 |
T |
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| Q |
601 |
ggaaccaagttatttctgcta |
621 |
Q |
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| T |
13716768 |
ggaaccaagttatttctgcta |
13716788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 304 - 677
Target Start/End: Original strand, 36633 - 37006
Alignment:
| Q |
304 |
agcttcgaacagattctatcaacaataggctgaaaatgttgaactttaagatttcctttaaacaaaagtatccccatataagtaaaaggcatggaggcat |
403 |
Q |
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| T |
36633 |
agctttgaacggattctatcaacaataggctggaaatgttgaactttgggctttcctttgaacaaaggtatccccagataagtaaaaggcatggaggcat |
36732 |
T |
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| Q |
404 |
gcttaaaaccagtgaggccagctatggtacaaagcctagaaagggggatggacttagaataaaacgtacttttaatgttgttgctaatttgaccagaata |
503 |
Q |
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| T |
36733 |
gcttaaaaccggtgaggccagctatggcacaaagccaagaatgcgggatgaacgcagaataaaaattacttttactgttgttgacaatttgaccagaata |
36832 |
T |
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| Q |
504 |
gctaccatagctttcaaaaagttccatgatatgcttgacattattaatattaactttacagataataagaatgtcgtcggcgtacaagcaatggctggga |
603 |
Q |
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| T |
36833 |
gctaccataactttcaaaaagttccatgatatgcttgacattagcaatattacctttacaaaaaataagaatgtcgtcggcgtacaagcagtggctggga |
36932 |
T |
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| Q |
604 |
accaagttatttctgctagcctgcatctgagataactttccttgagcaaccaggtccaaaattcctctactaag |
677 |
Q |
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| T |
36933 |
accaaattacttctgctagccaacatttgagacaactttccttgagaaaccaagtccaaaatacctctactaag |
37006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 36543 - 36634
Alignment:
| Q |
102 |
attgctcctagatacaattcaaatcttctttgtcgaagtatctccgctccaaatgaaattagtaaacattcttctaagctgcttaatcaaag |
193 |
Q |
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||||||| || | ||||| |||||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |
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| T |
36543 |
attgctcgtacagacaatgcaaatcttttttattgaagtatctccgctccaaataaaattagtaaacattcttctaagctgtttaatgaaag |
36634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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