View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_32 (Length: 204)
Name: NF8088_low_32
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 3731709 - 3731881
Alignment:
| Q |
18 |
agatacttgtggtggaagctatgtgtcttttagctgctaatgaacatgcagggtatcttactcttagtgttttctcttgttctgacacatgatgcttgat |
117 |
Q |
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| T |
3731709 |
agatacttgtggtggaagctatgtgtcttttagctgctaacgaacatgcagggtatctaactcttagtgttttctcttgttctgacacatgatgcttgat |
3731808 |
T |
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| Q |
118 |
aagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctcaatatacacaggt |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731809 |
aagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctcaatatacacaggt |
3731881 |
T |
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Target: chr6 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 11684027 - 11684197
Alignment:
| Q |
18 |
agatacttgtggtggaagctatgtgtcttttagctgctaatgaacatgcagggtatcttactcttagtgttttctcttgttctgacacatgatgcttgat |
117 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11684027 |
agatacttgtggtggatgctatgtgtcttttggctgctaatgaacatgcagggtatcttactcttagggttttctcttgttctgacacatgatgcttgat |
11684126 |
T |
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| Q |
118 |
aagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctcaatatacacag |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
11684127 |
aagcctttcttgtgtggttatttgccacagtttgttaacatctatcatcccaattctctcgatatacacag |
11684197 |
T |
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