View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8088_low_33 (Length: 204)

Name: NF8088_low_33
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8088_low_33
NF8088_low_33
[»] chr3 (10 HSPs)
chr3 (1-184)||(23148823-23149006)
chr3 (1-184)||(23145985-23146168)
chr3 (1-187)||(23017127-23017313)
chr3 (1-186)||(23039106-23039291)
chr3 (1-187)||(23024337-23024523)
chr3 (17-187)||(23032780-23032950)
chr3 (1-187)||(23036235-23036421)
chr3 (1-180)||(23140111-23140290)
chr3 (8-120)||(22946476-22946588)
chr3 (8-104)||(22972023-22972119)
[»] chr6 (1 HSPs)
chr6 (1-187)||(21779878-21780064)
[»] scaffold0554 (1 HSPs)
scaffold0554 (1-187)||(6503-6689)
[»] chr1 (3 HSPs)
chr1 (1-186)||(15885712-15885897)
chr1 (1-186)||(12609970-12610155)
chr1 (1-48)||(12637066-12637113)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-132)||(62218-62349)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 23148823 - 23149006
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23148823 tctctctggataaaacctctctggttcagtccagtagtttgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 23148922  T
Q  101 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgacaact 184  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23148923 ccatttatatcacacgcttgactacattctctcggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaact 23149006  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 23145985 - 23146168
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||||| || ||| |||||||||||||| |||||||||    
T  23145985 tctctctggataaaacctctctggttcagtccagtagtttggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataa 23146084  T
Q  101 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgacaact 184  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23146085 ccatttatatcacattcttgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaact 23146168  T

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Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 23017127 - 23017313
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  || |||||||||    
T  23017127 tctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataa 23017226  T
Q  101 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgacaactgat 187  Q
    |||| ||| |||||||||| || ||||||||| |||| |||||||||| | | ||| ||||  || | |||||||||||||||||||    
T  23017227 ccatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgat 23017313  T

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Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 23039106 - 23039291
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    ||||||||||||||| ||||| || || |||||||| |||||||||||||| |||||||||||||||| |||||| ||| ||||||| || |||||||||    
T  23039106 tctctctggataaaatctctccggctcagtccagtaatttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataa 23039205  T
Q  101 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgacaactga 186  Q
    |||||||| ||||||| ||||| ||||||||| || | |||||||||||  |||||||||| ||| | ||||||||||||||||||    
T  23039206 ccatttatctcacatgtttgacgacattctcttggcagcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactga 23039291  T

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Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 23024337 - 23024523
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||| | ||||||| ||||    
T  23024337 tctctctggataaaacctctctggttcggtccagtaatttggatctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcataa 23024436  T
Q  101 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgacaactgat 187  Q
    || | ||| | ||||| ||||  ||||||||||||||  ||||| ||||| |||||||||| ||| | |||||||||||||| ||||    
T  23024437 ccgtctatcttacatgattgagcacattctctcggtattaaaagtggtgccggagggtgtaacctcagggtttctttgacaattgat 23024523  T

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Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 23032780 - 23032950
Alignment:
Q  17 ctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccatttatatcacatg 116  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||||| ||| | ||||| || ||||||||||||||||| |||||||    
T  23032780 ctctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatg 23032879  T
Q  117 cttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgacaactgat 187  Q
    ||||||  |||||||| |||| |||||||||| | | |||||| | ||| | |||||||||||| ||||||    
T  23032880 cttgaccgcattctcttggtagcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgat 23032950  T

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Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 23036235 - 23036421
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    |||||| |||||||| ||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||| | || ||| ||||||| || |||||||||    
T  23036235 tctctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataa 23036334  T
Q  101 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgacaactgat 187  Q
    ||||||||  |||||||||||  ||| ||||| |||| |||||||||||  |||||||||| ||| | |||||||||||| ||||||    
T  23036335 ccatttatcacacatgcttgaacacactctcttggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgat 23036421  T

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Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 23140111 - 23140290
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    |||||||||||||||  |||| ||||| |||||||||||||||||||| ||||||||||| |||||||  | ||| ||||||||||  || |||||||||    
T  23140111 tctctctggataaaatttctctggttcagtccagtagtttggatctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgataa 23140210  T
Q  101 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgac 180  Q
    |||| ||| ||||||||||||| ||| ||||| |||| |||||||||  | |||| ||||| ||| ||||||||||||||    
T  23140211 ccatgtatctcacatgcttgaccacactctcttggtagcaaaagaggcaccggagtgtgtaacctcaaggtttctttgac 23140290  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 22946476 - 22946588
Alignment:
Q  8 ggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccattta 107  Q
    ||||||||| | || || || ||||| || |||||||| ||| | |||||||||||||||||||||||  || | || || || |||||||||||||  |    
T  22946476 ggataaaacttatctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctactattgattggtatgtgataaccatcaa 22946575  T
Q  108 tatcacatgcttg 120  Q
    | |||||||||||    
T  22946576 tctcacatgcttg 22946588  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 22972023 - 22972119
Alignment:
Q  8 ggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccat 104  Q
    ||||||||| | || || || ||||| || |||||||| ||| | |||||||||||||||||||||||  || | || || || |||||||||||||    
T  22972023 ggataaaacttatctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctacttttgattggtatgtgataaccat 22972119  T

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Target: chr6 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 21779878 - 21780064
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||    
T  21779878 tctctctggataaaacatctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaa 21779977  T
Q  101 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgacaactgat 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21779978 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgat 21780064  T

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Target: scaffold0554 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 6689 - 6503
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||| || ||| ||| |||| ||||    
T  6689 tctctctggataaaacctctctggttcagtccagaagtttggatctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataa 6590  T
Q  101 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgacaactgat 187  Q
    |||||||| |||||||||| || ||||||||| |||| |||||||||||| |||||||||| ||| | |||||||||||| ||||||    
T  6589 ccatttatctcacatgctttaccacattctcttggtagcaaaagaggtgctggagggtgtaacctaagggtttctttgacgactgat 6503  T

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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 15885897 - 15885712
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    ||||||||||||||||||||| ||||| ||||| || |||||||||||| | || ||||| ||||||| |||||| ||  | ||  | || || ||||||    
T  15885897 tctctctggataaaacctctctggttcagtccaatactttggatctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataa 15885798  T
Q  101 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgacaactga 186  Q
    ||||  || |||||||||||   ||||||||| || |  |||||||| || |||||||||| ||||||||| ||||| ||||||||    
T  15885797 ccatcaatctcacatgcttgttcacattctcttggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactga 15885712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 12609970 - 12610155
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    |||||| ||||||||| |||| ||||| |||||||| |||||||||||| | || ||||| ||||||| |||||| ||  | || || || ||  ||||     
T  12609970 tctctccggataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgatac 12610069  T
Q  101 ccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgcaggagggtgtagccttaaggtttctttgacaactga 186  Q
    ||||  || ||||||||||| | ||||||||| || |  ||||||||  | ||||| |||| ||||||||| ||||| ||||||||    
T  12610070 ccatcaatctcacatgcttgtccacattctcttggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactga 12610155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12637066 - 12637113
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctct 48  Q
    ||||||||||| ||||||||| ||||| |||||||| |||||||||||    
T  12637066 tctctctggatgaaacctctctggttcagtccagtactttggatctct 12637113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 62218 - 62349
Alignment:
Q  1 tctctctggataaaacctctcaggttcggtccagtagtttggatctcttgcgattgcccaagcattgattatcactttagtcttaatcggaatgtgataa 100  Q
    ||||||||||||||||||||| ||||| ||||||||  ||||||||||| |||||||||| ||||| | |||||  || || || || || || |||||     
T  62218 tctctctggataaaacctctctggttccgtccagtaccttggatctcttccgattgcccatgcattaactatcagctttgttttcattggtatatgatac 62317  T
Q  101 ccatttatatcacatgcttgactacattctct 132  Q
    ||||  || ||||||||||  |||||||||||    
T  62318 ccatcaatctcacatgcttctctacattctct 62349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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