View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8088_low_4 (Length: 650)
Name: NF8088_low_4
Description: NF8088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8088_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 72 - 505
Target Start/End: Original strand, 17473398 - 17473834
Alignment:
| Q |
72 |
tcacccacattactgtagcatacacaaaattcataaaa-atgataaagaatcccaaaattacacaaaaatgtatagcataaacaattccaaaattaatta |
170 |
Q |
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| T |
17473398 |
tcacccacattactgtagcatacacaaaattcataaaaaatgataaagaatcccaaaattacacaaaaatgtatagcataaacaataccaaaattaatta |
17473497 |
T |
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| Q |
171 |
ataccctaattctaaaccttgaagaagctaataatgaaaattgaagaaatttggaaaatgaaatgcatacccgacgttttccagcttcgagatgctcttg |
270 |
Q |
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| T |
17473498 |
ataccctaattctaaaccttgaagaagctaataatgaaaattgaagaaatttggaaaatgaaatgcatacccgacgttttccagcttcgagatgctcttg |
17473597 |
T |
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| Q |
271 |
cttccgcacctgagccgacgccatttgagaaaagcggaggatctagaagagatttttgaaatcaacgaattcaaaatctcaatgcataaatcaccattca |
370 |
Q |
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| T |
17473598 |
cttccgcacctgagccgacgccatttgagaaaagcggaggatctagaagagatttttgaaatcaacgaattcaaaatctcaatgcataaatcaccattca |
17473697 |
T |
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| Q |
371 |
cgttgcaatgaatccgaattgaagaaatttgaagagaatttccaagatcgcagaatcaatttg--aaaattgaaaattgaaacgttaaaaggagaatcga |
468 |
Q |
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| T |
17473698 |
cgttgcaatgaatccgaattgaagaaatttgaagagaatttccaagatcgcagaatcaatttgataaatttgaaaattgaaacgttaaaaggagaatcga |
17473797 |
T |
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| Q |
469 |
aagtgttggaattcagacagaagtacccgatctgatc |
505 |
Q |
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| T |
17473798 |
aagtgttggaattcagacagaagtgcccgatctgatc |
17473834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 554
Target Start/End: Original strand, 17473871 - 17473907
Alignment:
| Q |
518 |
tgcagatttctctctcttcttggttctggttttgggg |
554 |
Q |
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| T |
17473871 |
tgcagatttctctctcttcttggttctggttttgggg |
17473907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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